Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (1 gene)



The gene family HOM005580 has 26 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 26 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G41240 aly name=scaffold_304363.1;pid=900393;prot=eq;tid=931906 + scaffold_3 No
AT2G20410 ath RNA-binding ASCH domain protein; CONTAINS InterPro DOMAIN/s: ASCH domain (InterPro:IPR007374); Has 281 Blast hits to 281 proteins in 129 species: Archae - 2; Bacteria - 93; Metazoa - 106; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).;RNA-binding ASCH domain protein transcript=eq;prot=eq; + 2 No
BD1G00677 bdi pid=Bradi1g00677.1;tid=Bradi1g00677.1;GeneName=Bradi1g00677;transcript=eq;prot=eq - Bd1 No
CP00162G00340 cpa name=evm.TU.supercontig_162.34;pid=evm.TU.supercontig_162.34;prot=eq;transcript=eq - supercontig_162 No
CR16G01590 cre name=fgenesh2_pg.C_scaffold_39000005;pid=177055;prot=eq;tid=177055;transcript=eq + chromosome_16 No
FV0G26160 fve Activating signal cointegrator 1 (ASC-1) (probable) transcript=eq;prot=eq;pid=gene16625 - scf0513168 No
GM10G30980 gma 10 pid=16280523;transcript=eq;prot=eq;name=Glyma10g30980.1 + Gm10 No
GM20G36490 gma 20 pid=16318071;transcript=eq;prot=eq;name=Glyma20g36490.1 - Gm20 No
MD04G018740 mdo transcript=eq;prot=eq;pid=MDP0000171283;tid=MDP0000171283;contig=MDC003243.113 - 4 No
MD12G024210 mdo transcript=eq;prot=eq;pid=MDP0000144543;tid=MDP0000144543;contig=MDC029619.14 - 12 No
ME01551G01040 mes PACid=17962195;RNAname=cassava4.1_030563m;GeneName=cassava4.1_030563m.g;transcript=eq;prot=eq + scaffold01551 No
ME03614G03020 mes PACid=17966030;RNAname=cassava4.1_012381m;GeneName=cassava4.1_012381m.g;transcript=eq;prot=eq + scaffold03614 No
ME03802G00330 mes PACid=17989334;RNAname=cassava4.1_012561m;GeneName=cassava4.1_012561m.g;transcript=eq;prot=eq + scaffold03802 No
MT1G079930 mtr Activating signal cointegrator 1 (AHRD V1 *--- Q9QXN3); contains Interpro domain(s) IPR007374 ASCH domain transcript=eq;prot=eq;pid=Medtr1g079930.1; - 1 No
OS03G64250 osa expressed protein transcript=eq;prot=eq; + 3 No
OSINDICA_03G61280 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009055; + Chr03 No
PT13G04110 ptr PACid=17312608;name=POPTR_0013s04300;alias=pt031125m,eugene3.00130452; transcript=eq;prot=eq;protein_id=17312608; - scaffold_13 No
PT19G03270 ptr PACid=17311210;name=POPTR_0019s03460;alias=pt010191m; transcript=eq;prot=eq;protein_id=17311210; - scaffold_19 No
RC29680G00240 rco name=29680.m001682;gene=29680.t000025;note=29680.t000025;transcript=eq;prot=eq - 29680 No
RC29895G00100 rco name=29895.m000316;gene=29895.t000010;note=29895.t000010;transcript=eq;prot=eq + 29895 No
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