Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM005574 has 26 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 26 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G10220 aly name=fgenesh2_kg.716__1__AT2G35260.1;pid=497524;prot=eq;tid=497524 - scaffold_716 No
AL4G20620 aly name=Al_scaffold_0004_2020;pid=869857;prot=eq;tid=901370 + scaffold_4 No
AL7G25060 aly name=scaffold_702660.1;pid=914918;prot=eq;tid=946431 + scaffold_7 No
AT2G35260 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17840.1); Has 42 Blast hits to 42 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 2 No
AT4G17840 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; - 4 No
BD1G78710 bdi pid=Bradi1g78710.1;tid=Bradi1g78710.1;GeneName=Bradi1g78710;transcript=eq;prot=eq - Bd1 No
CP00239G00070 cpa name=evm.TU.supercontig_239.7;pid=evm.TU.supercontig_239.7;prot=eq;transcript=eq - supercontig_239 No
FV5G29910 fve Formin-like protein 13, Precursor (probable) transcript=eq;prot=eq;pid=gene10696 - LG5 No
GM01G40650 gma 01 pid=16245845;transcript=eq;prot=eq;name=Glyma01g40650.1 + Gm01 No
GM11G04660 gma 11 pid=16282695;transcript=eq;prot=eq;name=Glyma11g04660.1 - Gm11 No
LJ2G026170 lja prot=eq;transcript=eq;scaffold=CM0021;name=chr2.CM0021.500.nc + chr2 No
MD00G033440 mdo transcript=eq;prot=eq;pid=MDP0000163330;tid=MDP0000163330;contig=MDC001391.169 + MDC001391.169 No
MD06G003200 mdo transcript=eq;prot=eq;pid=MDP0000314213;tid=MDP0000314213;contig=MDC022258.113 + 6 No
ME11902G00020 mes PACid=17982858;RNAname=cassava4.1_009226m;GeneName=cassava4.1_009226m.g;transcript=eq;prot=eq + scaffold11902 No
MT5G014430 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr5g014430.1; - 5 No
OS03G01014 osa expressed protein transcript=eq;prot=eq; + 3 No
OSINDICA_03G00260 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC004850; + Chr03 No
PP00069G01070 ppa NULL name=gw1.69.56.1,pid=15748,prot=eq,tid=15748 + scaffold_69 No
PP00120G00730 ppa NULL name=e_gw1.120.37.1,pid=135533,prot=eq,tid=135533 + scaffold_120 No
PT01G02380 ptr PACid=17310198;name=POPTR_0001s02570;alias=pt038912m,eugene3.00290183; transcript=eq;prot=eq;protein_id=17310198; - scaffold_1 No
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