Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM005521 has 26 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 26 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G16480 aly name=scaffold_301815.1;pid=897845;prot=eq;tid=929358 - scaffold_3 No
AT3G15520 ath Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: cyclophilin 38 (TAIR:AT3G01480.1); Has 713 Blast hits to 711 proteins in 154 species: Archae - 5; Bacteria - 374; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).;Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein transcript=eq;prot=eq; - 3 No
BD1G24500 bdi pid=Bradi1g24500.1;tid=Bradi1g24500.1;GeneName=Bradi1g24500;transcript=eq;prot=eq - Bd1 No
CP00080G00990 cpa name=evm.TU.supercontig_80.99;pid=evm.TU.supercontig_80.99;prot=eq;transcript=eq - supercontig_80 No
CR06G11410 cre name=SKA_e_gwH.12.40.1;pid=205898;prot=eq;tid=205903;transcript=eq + chromosome_6 No
FV2G46040 fve Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic (PPIase CYP37), Precursor (similar to) transcript=eq;prot=eq;pid=gene31153 - LG2 No
GM06G38470 gma 06 pid=16264554;transcript=eq;prot=eq;name=Glyma06g38470.1 - Gm06 No
GM12G22700 gma 12 pid=16287964;transcript=eq;prot=eq;name=Glyma12g22700.1 + Gm12 No
MD03G019280 mdo transcript=eq;prot=eq;pid=MDP0000482092;tid=MDP0000482092;contig=MDC035786.11 + 3 No
ME03000G00330 mes PACid=17979773;RNAname=cassava4.1_006722m;GeneName=cassava4.1_006722m.g;transcript=eq;prot=eq + scaffold03000 No
MRCC299_05G07380 mrcc299 name=e_gw2.05.219.1;pid=81505;prot=eq;tid=81505;transcript=eq + Chr_05 No
OS07G37830 osa peptidyl%2Dprolyl cis%2Dtrans isomerase CYP37, chloroplast precursor, putative, expressed transcript=eq;prot=eq; + 7 No
OSINDICA_07G30120 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC024115; + Chr07 No
OT17G01840 ota peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase (ISS); name=OT17G01840;protein_id=CAL57911.1;prot=eq - chrom17 No
PP00037G00490 ppa NULL name=e_gw1.37.228.1,pid=121649,prot=eq,tid=121649 - scaffold_37 No
PP00204G00620 ppa NULL name=e_gw1.204.82.1,pid=143508,prot=eq,tid=143508 + scaffold_204 No
PT01G40570 ptr PACid=17305157;name=POPTR_0001s41520;alias=pt041484m; transcript=eq;prot=eq;protein_id=17305157; - scaffold_1 No
PT01G40580 ptr PACid=17338697;name=POPTR_0001s41530;alias=pt039528m; transcript=eq;prot=eq;protein_id=17338697; - scaffold_1 No
PT11G11690 ptr PACid=17549263;name=POPTR_0011s12450;alias=pta000974m; transcript=eq;prot=eq;protein_id=17549263; - scaffold_11 No
RC29716G00120 rco name=29716.m000309;gene=29716.t000012;note=29716.t000012;transcript=eq;prot=eq - 29716 No
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