Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM005484 has 26 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 26 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G16210 aly name=fgenesh2_kg.1__1688__AT1G15370.1;pid=471734;prot=eq;tid=471734 + scaffold_1 No
AT1G15370 ath SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); Has 91 Blast hits to 91 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 67; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).;SNARE-like superfamily protein transcript=eq;prot=eq; + 1 No
BD1G01014 bdi pid=Bradi1g01014.1;tid=Bradi1g01014.1;GeneName=Bradi1g01014;transcript=eq;prot=eq - Bd1 No
CP00065G00900 cpa name=evm.TU.supercontig_65.90;pid=evm.TU.supercontig_65.90;prot=eq;transcript=eq - supercontig_65 No
CR12G16170 cre name=SAN_estExt_fgenesh2_pg.C_870013;pid=195441;prot=eq;tid=195441;transcript=eq - chromosome_12 No
FV6G26180 fve Coatomer subunit zeta-1 (probable) transcript=eq;prot=eq;pid=gene15703 + LG6 No
GM07G03510 gma 07 pid=16266047;transcript=eq;prot=eq;name=Glyma07g03510.1 + Gm07 No
GM08G22580 gma 08 pid=16272107;transcript=eq;prot=eq;name=Glyma08g22580.1 - Gm08 No
GM15G01150 gma 15 pid=16297208;transcript=eq;prot=eq;name=Glyma15g01150.1 + Gm15 No
LJ0G456590 lja prot=eq;transcript=eq;scaffold=LjT09F21;name=LjT09F21.70.nc + chr0 No
MD06G008510 mdo transcript=eq;prot=eq;pid=MDP0000186398;tid=MDP0000186398;contig=MDC010684.209 - 6 No
ME04151G00380 mes PACid=17962904;RNAname=cassava4.1_018486m;GeneName=cassava4.1_018486m.g;transcript=eq;prot=eq + scaffold04151 No
MRCC299_02G04150 mrcc299 name=e_gw2.02.809.1;pid=78600;prot=eq;tid=78600;transcript=eq - Chr_02 No
MT2G103690 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011012 Longin-like transcript=eq;prot=eq;pid=Medtr2g103690.1; - 2 No
OSINDICA_03G60980 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009035; + Chr03 No
OSINDICA_03G61010 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009038; + Chr03 No
PP00003G02800 ppa NULL name=estExt_gwp_gw1.C_30487,pid=174107,prot=eq,tid=174107 - scaffold_3 No
PT01G19180 ptr PACid=17304224;name=POPTR_0001s19370;alias=pt040659m,estExt_fgenesh4_pg.C_LG_I1484; transcript=eq;prot=eq;protein_id=17304224; + scaffold_1 No
RC29841G01060 rco name=29841.m002845;gene=29841.t000109;note=29841.t000109;transcript=eq;prot=eq - 29841 No
SB01G000630 sbi 1 prot=eq;pid=5047664;tid=5047664 + chr_1 No
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