Gene family  

Sub-families
ORTHO007482 (23 genes in 19 species)
ORTHO045145 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (2 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM005456 has 26 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 26 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G20210 aly name=fgenesh2_kg.6__2021__AT5G19920.1;pid=488887;prot=eq;tid=488887 - scaffold_6 No
AL8G15150 aly name=fgenesh2_kg.8__979__AT5G50970.1;pid=495163;prot=eq;tid=495163 + scaffold_8 No
AT5G19920 ath Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G50970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; - 5 No
AT5G50970 ath transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G19920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; + 5 No
BD1G01487 bdi pid=Bradi1g01487.1;tid=Bradi1g01487.1;GeneName=Bradi1g01487;transcript=eq;prot=eq - Bd1 No
CP00013G01560 cpa name=evm.TU.supercontig_13.156;pid=evm.TU.supercontig_13.156;prot=eq;transcript=eq + supercontig_13 No
FV0G08820 fve B2 protein (probable) transcript=eq;prot=eq;pid=gene06410 - scf0513158 No
GM04G37820 gma 04 pid=16257093;transcript=eq;prot=eq;name=Glyma04g37820.1 + Gm04 No
GM06G17200 gma 06 pid=16263257;transcript=eq;prot=eq;name=Glyma06g17200.1 - Gm06 No
LJ0G031100 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_014422;name=LjSGA_014422.1 - LjSGA_014422 No
LJ4G030890 lja prot=eq;transcript=eq;scaffold=CM0175;name=chr4.CM0175.30.nd + chr4 No
MD00G077940 mdo transcript=eq;prot=eq;pid=MDP0000276327;tid=MDP0000276327;contig=MDC003283.412 - MDC003283.412 No
ME01701G00750 mes PACid=17965003;RNAname=cassava4.1_004662m;GeneName=cassava4.1_004662m.g;transcript=eq;prot=eq + scaffold01701 No
MT3G098600 mtr Uncharacterized WD repeat-containing protein alr3466 (AHRD V1 *--- Q8YRI1); contains Interpro domain(s) IPR017986 WD40 repeat, region transcript=eq;prot=eq;pid=Medtr3g098600.1; - 3 No
MT8G100180 mtr Genomic DNA chromosome 5 TAC clone K7 (AHRD V1 ***- Q9FI51_ARATH) transcript=eq;warning:contains inframe stop codonspid=Medtr8g100180.1; + 8 No
OSINDICA_03G60540 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009002; + Chr03 No
PP00080G00120 ppa NULL name=e_gw1.80.69.1,pid=130046,prot=eq,tid=130046 + scaffold_80 No
PT12G10420 ptr PACid=17337916;name=POPTR_0012s10990;alias=pt015720m,gw1.XII.1740.1; transcript=eq;prot=eq;protein_id=17337916; + scaffold_12 No
PT15G10810 ptr PACid=17310494;name=POPTR_0015s11760;alias=pt000363m; transcript=eq;prot=eq;protein_id=17310494; + scaffold_15 No
RC30147G03120 rco name=30147.m014407;gene=30147.t000678;note=30147.t000678;transcript=eq;prot=eq - 30147 No
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