Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM005421 has 27 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G33370 aly name=scaffold_603462.1;pid=911405;prot=eq;tid=942918 - scaffold_6 No
AL7G18210 aly name=Al_scaffold_0007_1753;pid=858254;prot=eq;tid=889767 - scaffold_7 No
AT4G10925 ath Nuclear transport factor 2 (NTF2) family protein; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G23960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Nuclear transport factor 2 (NTF2) family protein transcript=eq;prot=eq; - 4 No
AT4G23960 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein (TAIR:AT4G10925.3); Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; + 4 No
BD2G40830 bdi F-Box pid=Bradi2g40830.1;tid=Bradi2g40830.1;GeneName=Bradi2g40830;transcript=eq;prot=eq + Bd2 No
BD5G22810 bdi F-Box pid=Bradi5g22810.1;tid=Bradi5g22810.1;GeneName=Bradi5g22810;transcript=eq;prot=eq + Bd5 No
CP00634G00010 cpa name=evm.TU.supercontig_634.1;pid=evm.TU.supercontig_634.1;prot=eq;transcript=eq + supercontig_634 No
FV5G05790 fve F-box protein SKIP8 (similar to) transcript=eq;prot=eq;pid=gene32146 + LG5 No
GM05G36770 gma 05 pid=16260944;transcript=eq;prot=eq;name=Glyma05g36770.1 - Gm05 No
GM08G02790 gma 08 pid=16269738;transcript=eq;prot=eq;name=Glyma08g02790.1 + Gm08 No
LJ4G032970 lja prot=eq;transcript=eq;scaffold=CM0025;name=chr4.CM0025.500.nd - chr4 No
MD00G004310 mdo transcript=eq;prot=eq;pid=MDP0000270126;tid=MDP0000270126;contig=MDC000164.367 - MDC000164.367 No
MD02G017240 mdo transcript=eq;prot=eq;pid=MDP0000256433;tid=MDP0000256433;contig=MDC000486.261 + 2 No
ME03175G00420 mes PACid=17970757;RNAname=cassava4.1_012726m;GeneName=cassava4.1_012726m.g;transcript=eq;prot=eq + scaffold03175 No
ME05350G00030 mes PACid=17989721;RNAname=cassava4.1_028900m;GeneName=cassava4.1_028900m.g;transcript=eq;prot=eq - scaffold05350 No
OS01G36940 osa OsFBX13 %2D F%2Dbox domain containing protein, expressed transcript=eq;prot=eq; + 1 No
OSINDICA_01G34360 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC002222; + Chr01 No
PT01G10610 ptr PACid=17325444;name=POPTR_0001s10800;alias=pt039485m; transcript=eq;prot=eq;protein_id=17325444; + scaffold_1 No
PT03G13200 ptr PACid=17304502;name=POPTR_0003s14150;alias=pt023730m; transcript=eq;prot=eq;protein_id=17304502; + scaffold_3 No
RC30190G05690 rco name=30190.m010861;gene=30190.t000097;note=30190.t000097;transcript=eq;prot=eq + 30190 No
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