Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
zma
Zea mays (1 gene)



The gene family HOM005415 has 27 genes in 19 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G04200 aly name=scaffold_300462.1;pid=896492;prot=eq;tid=928005 + scaffold_3 No
AL3G21860 aly name=Al_scaffold_0003_2135;pid=873494;prot=eq;tid=905007 - scaffold_3 No
AL6G28800 aly name=fgenesh2_kg.6__2785__AT5G28500.1;pid=489651;prot=eq;tid=489651 + scaffold_6 No
AT3G04550 ath unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). transcript=eq;prot=eq; + 3 No
AT5G28500 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in 49 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
BD3G27730 bdi pid=Bradi3g27730.1;tid=Bradi3g27730.1;GeneName=Bradi3g27730;transcript=eq;prot=eq - Bd3 No
CP00162G00250 cpa name=evm.TU.supercontig_162.25;pid=evm.TU.supercontig_162.25;prot=eq;transcript=eq - supercontig_162 No
CR06G12470 cre name=au.g13564_t1;pid=295892;prot=eq;tid=295899;transcript=eq + chromosome_6 No
FV0G26090 fve DNA gyrase subunit B (probable) transcript=eq;prot=eq;pid=gene16618 - scf0513168 No
GM10G30990 gma 10 pid=16280524;transcript=eq;prot=eq;name=Glyma10g30990.1 + Gm10 No
GM20G36480 gma 20 pid=16318070;transcript=eq;prot=eq;name=Glyma20g36480.1 - Gm20 No
LJ5G016940 lja prot=eq;transcript=eq;scaffold=LjT09B23;name=chr5.LjT09B23.90.nd - chr5 No
MD00G459560 mdo transcript=eq;prot=eq;pid=MDP0000815966;tid=MDP0000815966;contig=MDC021258.167 + MDC021258.167 No
MD04G018700 mdo transcript=eq;prot=eq;pid=MDP0000776499;tid=MDP0000776499;contig=MDC021258.165 - 4 No
MD12G024190 mdo transcript=eq;prot=eq;pid=MDP0000640352;tid=MDP0000640352;contig=MDC021258.163 - 12 No
ME03614G03040 mes PACid=17966099;RNAname=cassava4.1_026834m;GeneName=cassava4.1_026834m.g;transcript=eq;prot=eq + scaffold03614 No
MT1G079870 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr1g079870.1; - 1 No
OS10G05890 osa hypothetical protein transcript=eq;prot=eq; - 10 Yes
OS10G30870 osa expressed protein transcript=eq;prot=eq; - 10 No
OSINDICA_10G21470 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC030995; - Chr10 No
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