Gene family  

Sub-families
ORTHO007341 (23 genes in 22 species)
ORTHO051326 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM005408 has 27 genes in 22 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G20230 aly name=scaffold_602089.1;pid=910032;prot=eq;tid=941545 + scaffold_6 No
AT5G19940 ath Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: Plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Plastid-lipid associated protein PAP / fibrillin family protein transcript=eq;prot=eq; + 5 No
BD5G20970 bdi pid=Bradi5g20970.1;tid=Bradi5g20970.1;GeneName=Bradi5g20970;transcript=eq;prot=eq - Bd5 No
CR12G03890 cre name=SKA_Chlre2_kg.scaffold_11000050;pid=205639;prot=eq;tid=205644;transcript=eq - chromosome_12 No
CR26G00330 cre name=fgenesh1_est.C_scaffold_81000003;pid=96369;prot=eq;tid=96369;transcript=eq + scaffold_26 Yes
FV6G29790 fve Probable plastid-lipid-associated protein 8, chloroplastic, Precursor (putative) transcript=eq;prot=eq;pid=gene15474 - LG6 No
GM17G29660 gma 17 pid=16306589;transcript=eq;prot=eq;name=Glyma17g29660.1 + Gm17 No
LJ5G008530 lja partial;prot=eq;transcript=eq;scaffold=CM0072;name=chr5.CM0072.340.nd + chr5 No
LJ5G008550 lja partial;prot=eq;transcript=eq;scaffold=CM0072;name=chr5.CM0072.360.nd + chr5 No
MD00G012830 mdo transcript=eq;prot=eq;pid=MDP0000157094;tid=MDP0000157094;contig=MDC000529.198 - MDC000529.198 No
MD15G004990 mdo transcript=eq;prot=eq;pid=MDP0000207225;tid=MDP0000207225;contig=MDC016371.51 + 15 No
ME03874G00110 mes PACid=17960915;RNAname=cassava4.1_014752m;GeneName=cassava4.1_014752m.g;transcript=ne;prot=eq + scaffold03874 No
MRCC299_07G03070 mrcc299 name=EuGene.0700010307;pid=60022;prot=eq;tid=60022;transcript=eq - Chr_07 No
OL07G02250 olu NULL name=eugene.0700010223,pid=32626,prot=eq,tid=32626 + Chr_7 No
OS04G51792 osa PAP fibrillin family domain containing protein, expressed transcript=eq;prot=eq; - 4 No
OT07G02020 ota name=OT07G02020;protein_id=CAL54475.1;prot=eq + chrom07 No
PP00133G00370 ppa NULL name=e_gw1.133.111.1,pid=136959,prot=eq,tid=136959 + scaffold_133 No
PT06G27420 ptr PACid=17313835;name=POPTR_0006s29130;alias=pt018584m; transcript=eq;prot=eq;protein_id=17313835; + scaffold_6 No
RC28226G00140 rco name=28226.m000844;gene=28226.t000014;note=28226.t000014;transcript=eq;prot=eq + 28226 No
SB06G027870 sbi 6 prot=eq;pid=5057820;tid=5057820 - chr_6 No
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