Gene family  

Sub-families
ORTHO006470 (24 genes in 19 species)
ORTHO064978 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM005366 has 27 genes in 19 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G04670 aly name=fgenesh2_kg.4__360__AT2G24440.1;pid=481300;prot=eq;tid=481300 + scaffold_4 No
AL7G10230 aly name=scaffold_701076.1;pid=913334;prot=eq;tid=944847 - scaffold_7 No
AT2G24440 ath selenium binding; FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Selenoprotein, Rdx type (InterPro:IPR011893); BEST Arabidopsis thaliana protein match is: selenium binding (TAIR:AT4G31360.1); Has 1421 Blast hits to 981 proteins in 155 species: Archae - 2; Bacteria - 33; Metazoa - 566; Fungi - 103; Plants - 97; Viruses - 1; Other Eukaryotes - 619 (source: NCBI BLink).;selenium binding transcript=eq;prot=eq; + 2 No
AT4G31360 ath selenium binding; FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Selenoprotein, Rdx type (InterPro:IPR011893); BEST Arabidopsis thaliana protein match is: selenium binding (TAIR:AT2G24440.1); Has 221 Blast hits to 197 proteins in 65 species: Archae - 0; Bacteria - 10; Metazoa - 93; Fungi - 17; Plants - 58; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).;selenium binding transcript=eq;prot=eq; + 4 No
BD1G00247 bdi pid=Bradi1g00247.1;tid=Bradi1g00247.1;GeneName=Bradi1g00247;transcript=eq;prot=eq - Bd1 No
BD4G09320 bdi pid=Bradi4g09320.1;tid=Bradi4g09320.1;GeneName=Bradi4g09320;transcript=eq;prot=eq - Bd4 No
BD4G09610 bdi pid=Bradi4g09610.1;tid=Bradi4g09610.1;GeneName=Bradi4g09610;transcript=eq;prot=eq + Bd4 No
CP00244G00120 cpa name=evm.TU.supercontig_244.12;pid=evm.TU.supercontig_244.12;prot=eq;transcript=eq + supercontig_244 No
CR02G10160 cre name=ALO_fgenesh2_pg.C_scaffold_79000012;pid=196049;prot=eq;tid=196049;transcript=eq - chromosome_2 No
GM14G17190 gma 14 pid=16295610;transcript=eq;prot=eq;name=Glyma14g17190.1 + Gm14 No
GM17G29690 gma 17 pid=16306594;transcript=eq;prot=eq;name=Glyma17g29690.1 + Gm17 No
LJ5G008460 lja partial;prot=eq;transcript=eq;scaffold=CM0072;name=chr5.CM0072.270.nd - chr5 No
MD08G014210 mdo transcript=eq;prot=eq;pid=MDP0000533069;tid=MDP0000533069;contig=MDC006155.85 + 8 No
ME03049G01040 mes PACid=17959905;RNAname=cassava4.1_017736m;GeneName=cassava4.1_017736m.g;transcript=eq;prot=eq + scaffold03049 No
MRCC299_14G00520 mrcc299 name=MAE_fgenesh2_pg.C_Chr_14000034;pid=113704;prot=eq;tid=113704;transcript=eq + Chr_14 Yes
OS05G16170 osa conserved hypothetical protein transcript=eq;prot=eq; + 5 No
OS11G47770 osa selT%2FselW%2FselH selenoprotein domain containing protein, expressed transcript=eq;prot=eq; + 11 No
OSINDICA_05G16260 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC020401; + Chr05 No
OSINDICA_11G34120 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC036088; + Chr11 No
PP00259G00170 ppa NULL name=e_gw1.259.50.1,pid=147446,prot=eq,tid=147446 + scaffold_259 No
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