Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM005353 has 27 genes in 23 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G08520 aly name=fgenesh2_kg.6__829__AT5G08540.1;pid=487695;prot=eq;tid=487695 + scaffold_6 No
AT5G08540 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
BD5G16350 bdi pid=Bradi5g16350.1;tid=Bradi5g16350.1;GeneName=Bradi5g16350;transcript=eq;prot=eq + Bd5 No
CP00221G00140 cpa name=evm.TU.supercontig_221.14;pid=evm.TU.supercontig_221.14;prot=eq;transcript=eq - supercontig_221 No
CR09G03540 cre name=SKA_Chlre2_kg.scaffold_25000102;pid=206053;prot=eq;tid=206058;transcript=eq + chromosome_9 No
FV4G23030 fve ATP-dependent RNA helicase DBP7 (probable) transcript=eq;prot=eq;pid=gene00770 - LG4 No
GM00G00235 gma 48 pid=16242722;transcript=eq;prot=eq;name=Glyma0048s00270.1 - scaffold_48 No
GM20G00210 gma 20 pid=16315035;transcript=eq;prot=eq;name=Glyma20g00210.1 + Gm20 No
LJ0G445500 lja prot=eq;transcript=eq;scaffold=LjT26P12;name=LjT26P12.80.nd - chr0 No
MD00G288310 mdo transcript=eq;prot=eq;pid=MDP0000203939;tid=MDP0000203939;contig=MDC012328.429 - MDC012328.429 No
MD13G000060 mdo transcript=eq;prot=eq;pid=MDP0000233115;tid=MDP0000233115;contig=MDC009771.222 - 13 No
ME05875G02470 mes PACid=17973068;RNAname=cassava4.1_010825m;GeneName=cassava4.1_010825m.g;transcript=eq;prot=eq - scaffold05875 No
MT1G039490 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr1g039490.1; + 1 No
OL20G03160 olu NULL name=gwEuk.20.211.1,pid=5359,prot=eq,tid=5359 - Chr_20 No
OS04G44560 osa expressed protein transcript=eq;prot=eq; + 4 No
OSINDICA_04G36680 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC018247; + Chr04 No
OT14G03390 ota RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains (ISS); name=OT14G03390;protein_id=CAL57083.1;prot=eq - chrom14 No
PP00198G00730 ppa NULL name=gw1.198.113.1,pid=45363,prot=eq,tid=45363 + scaffold_198 No
PT10G25000 ptr PACid=17340761;name=POPTR_0010s26140;alias=pt012302m; transcript=eq;prot=eq;protein_id=17340761; + scaffold_10 No
RC30131G04280 rco name=30131.m007283;gene=30131.t000434;note=30131.t000434;transcript=eq;prot=eq + 30131 No
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