Gene family 
- Id
- HOM005301
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
- No subfamilies present
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (1 gene)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (2 genes)
- gma
- Glycine max (2 genes)
- mdo
- Malus domestica (5 genes)
- mes
- Manihot esculenta (1 gene)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (1 gene)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ptr
- Populus trichocarpa (1 gene)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- tca
- Theobroma cacao (1 gene)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (2 genes)
The gene family HOM005301 has 27 genes in 20 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM005301
Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G52500 | aly | name=Al_scaffold_0001_5170;pid=883403;prot=eq;tid=914916 | + | scaffold_1 | No | |
| AT1G56310 | ath | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3'-5' exonuclease domain-containing protein (TAIR:AT5G24340.1); Has 1695 Blast hits to 1690 proteins in 549 species: Archae - 0; Bacteria - 819; Metazoa - 246; Fungi - 58; Plants - 209; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein | transcript=eq;prot=eq; | + | 1 | No |
| BD2G28110 | bdi | ATP-dependent DNA helicase activity (Blast2GO) | pid=Bradi2g28110.1;tid=Bradi2g28110.1;GeneName=Bradi2g28110;transcript=eq;prot=eq | + | Bd2 | No |
| CP00048G01350 | cpa | name=evm.TU.supercontig_48.135;pid=evm.TU.supercontig_48.135;prot=eq;transcript=eq | + | supercontig_48 | No | |
| CR10G05950 | cre | name=kg.chromosome_10_#_881_#_AV387846;pid=311892;prot=eq;tid=311899;transcript=eq | + | chromosome_10 | No | |
| FV5G21720 | fve | Probable exonuclease mut-7 homolog | transcript=eq;prot=eq;pid=gene12172 | - | LG5 | No |
| FV6G02030 | fve | Probable exonuclease mut-7 homolog | transcript=eq;prot=eq;pid=gene31561 | - | LG6 | No |
| GM10G28980 | gma | 10 | pid=16280287;transcript=eq;prot=eq;name=Glyma10g28980.1 | - | Gm10 | No |
| GM20G38330 | gma | 20 | pid=16318279;transcript=eq;prot=eq;name=Glyma20g38330.1 | + | Gm20 | No |
| MD00G285620 | mdo | transcript=eq;prot=eq;pid=MDP0000203168;tid=MDP0000203168;contig=MDC012210.290 | + | MDC012210.290 | No | |
| MD04G015960 | mdo | transcript=eq;prot=eq;pid=MDP0000139248;tid=MDP0000139248;contig=MDC010012.227 | - | 4 | Yes | |
| MD04G015980 | mdo | transcript=eq;prot=eq;pid=MDP0000250781;tid=MDP0000250781;contig=MDC010012.227 | - | 4 | No | |
| MD04G016020 | mdo | transcript=eq;prot=eq;pid=MDP0000250783;tid=MDP0000250783;contig=MDC010012.227 | - | 4 | No | |
| MD12G021310 | mdo | transcript=eq;prot=eq;pid=MDP0000309899;tid=MDP0000309899;contig=MDC020320.144 | - | 12 | No | |
| ME10305G00270 | mes | PACid=17973909;RNAname=cassava4.1_023903m;GeneName=cassava4.1_023903m.g;transcript=eq;prot=eq | + | scaffold10305 | No | |
| MRCC299_09G05690 | mrcc299 | name=EuGene.0900010567;pid=61584;prot=eq;tid=61584;transcript=eq | - | Chr_09 | No | |
| MT1G083820 | mtr | Unknown Protein (AHRD V1); contains Interpro domain(s) IPR002562 3'-5' exonuclease | transcript=eq;prot=eq;pid=Medtr1g083820.1; | + | 1 | No |
| OS05G28860 | osa | 3%27%2D5%27 exonuclease, putative, expressed | transcript=eq;prot=eq; | + | 5 | No |
| OSINDICA_05G25590 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC020889; | + | Chr05 | No |
| PT05G01800 | ptr | PACid=17319283;name=POPTR_0005s01990;alias=pt032534m,gw1.133.184.1; | transcript=eq;prot=eq;protein_id=17319283; | - | scaffold_5 | No |