Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM005301 has 27 genes in 20 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G52500 aly name=Al_scaffold_0001_5170;pid=883403;prot=eq;tid=914916 + scaffold_1 No
AT1G56310 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3'-5' exonuclease domain-containing protein (TAIR:AT5G24340.1); Has 1695 Blast hits to 1690 proteins in 549 species: Archae - 0; Bacteria - 819; Metazoa - 246; Fungi - 58; Plants - 209; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; + 1 No
BD2G28110 bdi ATP-dependent DNA helicase activity (Blast2GO) pid=Bradi2g28110.1;tid=Bradi2g28110.1;GeneName=Bradi2g28110;transcript=eq;prot=eq + Bd2 No
CP00048G01350 cpa name=evm.TU.supercontig_48.135;pid=evm.TU.supercontig_48.135;prot=eq;transcript=eq + supercontig_48 No
CR10G05950 cre name=kg.chromosome_10_#_881_#_AV387846;pid=311892;prot=eq;tid=311899;transcript=eq + chromosome_10 No
FV5G21720 fve Probable exonuclease mut-7 homolog transcript=eq;prot=eq;pid=gene12172 - LG5 No
FV6G02030 fve Probable exonuclease mut-7 homolog transcript=eq;prot=eq;pid=gene31561 - LG6 No
GM10G28980 gma 10 pid=16280287;transcript=eq;prot=eq;name=Glyma10g28980.1 - Gm10 No
GM20G38330 gma 20 pid=16318279;transcript=eq;prot=eq;name=Glyma20g38330.1 + Gm20 No
MD00G285620 mdo transcript=eq;prot=eq;pid=MDP0000203168;tid=MDP0000203168;contig=MDC012210.290 + MDC012210.290 No
MD04G015960 mdo transcript=eq;prot=eq;pid=MDP0000139248;tid=MDP0000139248;contig=MDC010012.227 - 4 Yes
MD04G015980 mdo transcript=eq;prot=eq;pid=MDP0000250781;tid=MDP0000250781;contig=MDC010012.227 - 4 No
MD04G016020 mdo transcript=eq;prot=eq;pid=MDP0000250783;tid=MDP0000250783;contig=MDC010012.227 - 4 No
MD12G021310 mdo transcript=eq;prot=eq;pid=MDP0000309899;tid=MDP0000309899;contig=MDC020320.144 - 12 No
ME10305G00270 mes PACid=17973909;RNAname=cassava4.1_023903m;GeneName=cassava4.1_023903m.g;transcript=eq;prot=eq + scaffold10305 No
MRCC299_09G05690 mrcc299 name=EuGene.0900010567;pid=61584;prot=eq;tid=61584;transcript=eq - Chr_09 No
MT1G083820 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR002562 3'-5' exonuclease transcript=eq;prot=eq;pid=Medtr1g083820.1; + 1 No
OS05G28860 osa 3%27%2D5%27 exonuclease, putative, expressed transcript=eq;prot=eq; + 5 No
OSINDICA_05G25590 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC020889; + Chr05 No
PT05G01800 ptr PACid=17319283;name=POPTR_0005s01990;alias=pt032534m,gw1.133.184.1; transcript=eq;prot=eq;protein_id=17319283; - scaffold_5 No
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