Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM005291 has 27 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G26860 aly name=scaffold_302903.1;pid=898933;prot=eq;tid=930446 - scaffold_3 No
AT3G23900 ath RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Filamin/ABP280 repeat (InterPro:IPR001298), Immunoglobulin E-set (InterPro:IPR014756), Filamin/ABP280 repeat-like (InterPro:IPR017868), RNA recognition motif, RNP-1 (InterPro:IPR000504), Immunoglobulin-like fold (InterPro:IPR013783), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.1); Has 108738 Blast hits to 50207 proteins in 2086 species: Archae - 86; Bacteria - 8977; Metazoa - 55837; Fungi - 11723; Plants - 7259; Viruses - 753; Other Eukaryotes - 24103 (source: NCBI BLink).;RNA recognition motif (RRM)-containing protein transcript=eq;prot=eq; - 3 No
BD2G03701 bdi pid=Bradi2g03701.3;tid=Bradi2g03701.3;GeneName=Bradi2g03701;transcript=eq;prot=eq - Bd2 No
CP00083G00400 cpa name=evm.TU.supercontig_83.40;pid=evm.TU.supercontig_83.40;prot=eq;transcript=eq + supercontig_83 No
CP00083G00410 cpa name=evm.TU.supercontig_83.41;pid=evm.TU.supercontig_83.41;prot=eq;transcript=eq + supercontig_83 No
CR16G04950 cre name=pasa_Sanger_mRNA14377;pid=395908;prot=eq;tid=404690;transcript=eq + chromosome_16 No
FV4G17010 fve Tripartite motif-containing protein 3 (probable) transcript=eq;prot=eq;pid=gene06545 + LG4 No
GM05G28570 gma 05 pid=16259948;transcript=eq;prot=eq;name=Glyma05g28570.1 - Gm05 No
GM08G11590 gma 08 pid=16270786;transcript=eq;prot=eq;name=Glyma08g11590.1 - Gm08 No
MD09G014200 mdo transcript=eq;prot=eq;pid=MDP0000268035;tid=MDP0000268035;contig=MDC002688.341 - 9 No
ME02421G00780 mes PACid=17982480;RNAname=cassava4.1_001497m;GeneName=cassava4.1_001497m.g;transcript=eq;prot=eq + scaffold02421 No
MRCC299_12G02290 mrcc299 name=EuGene.1200010290;pid=63118;prot=eq;tid=63118;transcript=eq - Chr_12 No
OL11G02530 olu NULL name=eugene.1100010252,pid=26579,prot=eq,tid=26579 - Chr_11 No
OS01G01150 osa RNA recognition motif, putative, expressed transcript=eq;prot=eq; + 1 No
OSINDICA_01G00180 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC000015; + Chr01 No
OT11G02650 ota RNA recognition motif (ISS); name=OT11G02650;protein_id=CAL55870.1;prot=eq - chrom11 No
PP00008G00130 ppa NULL name=fgenesh1_pg.scaffold_8000015,pid=65813,prot=eq,tid=65813 - scaffold_8 No
PP00018G00320 ppa NULL name=estExt_fgenesh1_pg.C_180039,pid=160064,prot=eq,tid=160064 + scaffold_18 No
PT01G31880 ptr PACid=17309748;name=POPTR_0001s32640;alias=pt038384m; transcript=eq;prot=eq;protein_id=17309748; + scaffold_1 No
PT17G08320 ptr PACid=17338759;name=POPTR_0017s08510;alias=pt028825m,estExt_fgenesh4_pg.C_880014; transcript=eq;prot=eq;protein_id=17338759; + scaffold_17 No
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