Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM005263 has 27 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G41750 aly name=fgenesh1_pm.C_scaffold_1003032;pid=314252;prot=eq;tid=314252 + scaffold_1 No
AT1G48175 ath embryo defective 2191 (emb2191); FUNCTIONS IN: hydrolase activity, zinc ion binding, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193); BEST Arabidopsis thaliana protein match is: tRNA arginine adenosine deaminase (TAIR:AT1G68720.1); Has 7475 Blast hits to 7473 proteins in 2425 species: Archae - 62; Bacteria - 5225; Metazoa - 126; Fungi - 224; Plants - 142; Viruses - 0; Other Eukaryotes - 1696 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family protein transcript=eq;prot=eq; + 1 No
BD1G63890 bdi zinc ion binding (Blast2GO) pid=Bradi1g63890.1;tid=Bradi1g63890.1;GeneName=Bradi1g63890;transcript=eq;prot=eq - Bd1 No
CR12G05330 cre name=au.g3266_t1;pid=284877;prot=eq;tid=284884;transcript=eq - chromosome_12 No
FV1G23580 fve tRNA-specific adenosine deaminase 2 (probable) transcript=eq;prot=eq;pid=gene31770 + LG1 No
FV5G13830 fve tRNA-specific adenosine deaminase 2 (probable) transcript=eq;prot=eq;pid=gene25956 + LG5 No
GM13G00530 gma 13 pid=16289223;transcript=eq;prot=eq;name=Glyma13g00530.1 + Gm13 No
GM17G06680 gma 17 pid=16304653;transcript=eq;prot=eq;name=Glyma17g06680.1 + Gm17 No
LJ4G023490 lja partial;prot=eq;transcript=eq;scaffold=CM0244;name=chr4.CM0244.30.nd - chr4 No
MD02G007340 mdo transcript=eq;prot=eq;pid=MDP0000135138;tid=MDP0000135138;contig=MDC003413.764 - 2 No
MD13G028170 mdo transcript=eq;prot=eq;pid=MDP0000224467;tid=MDP0000224467;contig=MDC021654.111 + 13 No
ME04043G00800 mes PACid=17987559;RNAname=cassava4.1_031411m;GeneName=cassava4.1_031411m.g;transcript=eq;prot=eq + scaffold04043 No
MRCC299_05G02290 mrcc299 name=est_cluster_kg.Chr_05__50__3200456:1;pid=108241;prot=eq;tid=108241;transcript=eq + Chr_05 No
MT7G086830 mtr tRNA-specific adenosine deaminase 2 (AHRD V1 **** Q5E9J7); contains Interpro domain(s) IPR016193 Cytidine deaminase-like transcript=eq;prot=eq;pid=Medtr7g086830.1; - 7 No
OL05G01890 olu NULL name=estExt_GenewiseEukaryote.C_Chr_50491,pid=45819,prot=eq,tid=45819 - Chr_5 No
OS03G20570 osa tRNA%2Dspecific adenosine deaminase 2, putative, expressed transcript=eq;prot=eq; + 3 No
OSINDICA_03G19620 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC006317; + Chr03 No
OT05G01940 ota Cytosine deaminase FCY1 and related enzymes (ISS); name=OT05G01940;protein_id=CAL53949.1;prot=eq - chrom05 No
PP00150G00600 ppa NULL name=fgenesh1_pg.scaffold_150000064,pid=86831,prot=eq,tid=86831 - scaffold_150 No
PT06G07310 ptr PACid=17307235;name=POPTR_0006s07500;alias=pt018967m,eugene3.00060623; transcript=eq;prot=eq;protein_id=17307235; + scaffold_6 No
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