Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM005260 has 27 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 27 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G15930 aly name=scaffold_301754.1;pid=897784;prot=eq;tid=929297 - scaffold_3 No
AL3G38480 aly name=fgenesh2_kg.3__3363__AT2G17695.1;pid=480662;prot=eq;tid=480662 - scaffold_3 No
AT2G17695 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1990 (InterPro:IPR018960); Has 259 Blast hits to 259 proteins in 120 species: Archae - 0; Bacteria - 197; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). transcript=eq;prot=eq; - 2 No
BD1G78057 bdi pid=Bradi1g78057.1;tid=Bradi1g78057.1;GeneName=Bradi1g78057;transcript=eq;prot=eq - Bd1 No
CP00006G03280 cpa name=evm.TU.supercontig_6.329;pid=evm.TU.supercontig_6.329;prot=eq;transcript=eq - supercontig_6 No
CR17G05160 cre name=e_gwW.32.121.1;pid=119724;prot=eq;tid=119724;transcript=eq - chromosome_17 No
FV1G12660 fve UPF0548 protein At2g17695 (putative) transcript=eq;prot=eq;pid=gene14510 - LG1 No
GM16G22910 gma 16 pid=16302587;transcript=eq;prot=eq;name=Glyma16g22910.1 - Gm16 No
LJ0G057430 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_020836;name=LjSGA_020836.1 + LjSGA_020836 No
MD02G023360 mdo transcript=eq;prot=eq;pid=MDP0000134818;tid=MDP0000134818;contig=MDC001646.89 + 2 No
ME06512G01700 mes PACid=17966302;RNAname=cassava4.1_016407m;GeneName=cassava4.1_016407m.g;transcript=eq;prot=eq + scaffold06512 No
MRCC299_14G01460 mrcc299 name=e_gw2.14.313.1;pid=88113;prot=eq;tid=88113;transcript=eq + Chr_14 No
MT8G074720 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018960 Domain of unknown function DUF1990 transcript=eq;prot=eq;pid=Medtr8g074720.1; - 8 No
OL09G00590 olu NULL name=eugene.0900010058,pid=33354,prot=eq,tid=33354 + Chr_9 No
OS03G01730 osa expressed protein transcript=eq;prot=eq; + 3 No
OS04G02890 osa expressed protein transcript=eq;prot=eq; + 4 No
OSINDICA_03G00800 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC004891; + Chr03 No
OSINDICA_03G00820 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC004893; + Chr03 No
OSINDICA_09G03250 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC027833; + Chr09 No
PP00028G00260 ppa NULL name=estExt_fgenesh1_pg.C_280028,pid=160926,prot=eq,tid=160926 - scaffold_28 No
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