Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family HOM005227 has 28 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 28 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G41600 aly name=scaffold_104406.1;pid=891612;prot=eq;tid=923125 + scaffold_1 No
AT1G48050 ath Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation.;Ku80 family protein transcript=eq;prot=eq; + 1 No
BD1G01007 bdi pid=Bradi1g01007.1;tid=Bradi1g01007.1;GeneName=Bradi1g01007;transcript=eq;prot=eq - Bd1 No
CP00018G01110 cpa name=evm.TU.supercontig_18.111;pid=evm.TU.supercontig_18.111;prot=eq;transcript=eq - supercontig_18 No
CR10G01410 cre name=OVA_fgenesh1_pg.C_scaffold_8000249;pid=205969;prot=eq;tid=205974;transcript=eq - chromosome_10 No
FV7G11120 fve ATP-dependent DNA helicase 2 subunit ku80 (probable) transcript=eq;prot=eq;pid=gene19398 + LG7 No
GM05G25550 gma 05 pid=16259589;transcript=eq;prot=eq;name=Glyma05g25550.1 + Gm05 No
GM06G37470 gma 06 pid=16264472;transcript=eq;prot=eq;name=Glyma06g37470.1 + Gm06 No
GM17G00970 gma 17 pid=16303979;transcript=eq;prot=eq;name=Glyma17g00970.1 - Gm17 No
LJ0G454260 lja prot=eq;transcript=eq;scaffold=LjT25G12;name=LjT25G12.110.nc + chr0 No
ME04882G00700 mes PACid=17963202;RNAname=cassava4.1_030820m;GeneName=cassava4.1_030820m.g;transcript=eq;prot=eq + scaffold04882 No
MRCC299_07G03410 mrcc299 name=EuGene.0700010342;pid=60057;prot=eq;tid=60057;transcript=eq + Chr_07 No
MT4G023560 mtr ATP-dependent DNA helicase 2 subunit 2 (AHRD V1 ***- P27641); contains Interpro domain(s) IPR016194 Spen Paralogue and Orthologue C-terminal-like transcript=eq;prot=eq;pid=Medtr4g023560.1; + 4 No
OL07G04640 olu NULL name=fgenesh1_pg.C_Chr_7000355,pid=16311,prot=eq,tid=16311 - Chr_7 No
OS03G63920 osa KAP%2D2, putative, expressed transcript=eq;prot=eq; + 3 No
OSINDICA_03G60990 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009036; + Chr03 No
PP00121G00160 ppa NULL name=estExt_gwp_gw1.C_1210022,pid=188592,prot=eq,tid=188592 - scaffold_121 No
PT02G14720 ptr PACid=17308320;name=POPTR_0002s14910;alias=pt022438m,gw1.II.1248.1; transcript=eq;prot=eq;protein_id=17308320; - scaffold_2 No
PT14G06340 ptr PACid=17336577;name=POPTR_0014s06530;alias=pt035159m,eugene3.00140154,Pt-KU80.1; transcript=eq;prot=eq;protein_id=17336577; - scaffold_14 No
RC30174G01450 rco name=30174.m008890;gene=30174.t000287;note=30174.t000287;transcript=eq;prot=eq - 30174 No
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