Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family HOM005179 has 28 genes in 22 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 28 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G18800 aly name=Al_scaffold_0001_1854;pid=880087;prot=eq;tid=911600 - scaffold_1 No
AT1G17850 ath Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1).;Rhodanese/Cell cycle control phosphatase superfamily protein transcript=eq;prot=eq; - 1 No
BD1G00530 bdi pid=Bradi1g00530.1;tid=Bradi1g00530.1;GeneName=Bradi1g00530;transcript=eq;prot=eq + Bd1 No
CP00111G00360 cpa name=evm.TU.supercontig_111.36;pid=evm.TU.supercontig_111.36;prot=eq;transcript=eq - supercontig_111 No
CP00111G00380 cpa name=evm.TU.supercontig_111.38;pid=evm.TU.supercontig_111.38;prot=eq;transcript=eq - supercontig_111 No
CR06G11700 cre name=pasa_Sanger_mRNA28689;pid=401816;prot=eq;tid=419175;transcript=eq - chromosome_6 No
FV5G15670 fve UPF0176 protein CPn_0734/CP_0012/CPj0734/CpB0762 (probable) transcript=eq;prot=eq;pid=gene09285 + LG5 No
GM05G33510 gma 05 pid=16260545;transcript=eq;prot=eq;name=Glyma05g33510.1 + Gm05 No
GM08G06220 gma 08 pid=16270161;transcript=eq;prot=eq;name=Glyma08g06220.1 - Gm08 No
MD06G020470 mdo transcript=eq;prot=eq;pid=MDP0000354160;tid=MDP0000354160;contig=MDC016479.97 - 6 No
MD14G022720 mdo transcript=eq;prot=eq;pid=MDP0000233150;tid=MDP0000233150;contig=MDC020872.137 - 14 No
ME09619G00020 mes PACid=17975494;RNAname=cassava4.1_033041m;GeneName=cassava4.1_033041m.g;transcript=eq;prot=eq + scaffold09619 No
ME09619G00030 mes PACid=17975507;RNAname=cassava4.1_021828m;GeneName=cassava4.1_021828m.g;transcript=eq;prot=eq + scaffold09619 No
ME09619G00040 mes PACid=17975500;RNAname=cassava4.1_030845m;GeneName=cassava4.1_030845m.g;transcript=eq;prot=eq + scaffold09619 No
MRCC299_04G01840 mrcc299 name=EuGene.0400010188;pid=57659;prot=eq;tid=57659;transcript=eq + Chr_04 No
OL03G02360 olu NULL name=gwEuk.3.306.1,pid=4067,prot=eq,tid=4067 + Chr_3 No
OS03G64350 osa rhodanese%2Dlike domain containing protein, putative, expressed transcript=eq;prot=eq; - 3 No
OSINDICA_03G61410 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009063; - Chr03 No
OT03G02380 ota name=OT03G02380;protein_id=CAL52890.1;prot=eq + chrom03 No
PP00065G00720 ppa NULL name=gw1.65.75.1,pid=14245,prot=eq,tid=14245 - scaffold_65 No
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