Gene family  

Sub-families
ORTHO006670 (24 genes in 22 species)
ORTHO055311 (2 genes in 1 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM005066 has 28 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 28 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G41590 aly name=scaffold_604299.1;pid=912242;prot=eq;tid=943755 - scaffold_6 No
AT4G00090 ath Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; + 4 No
BD1G00847 bdi pid=Bradi1g00847.1;tid=Bradi1g00847.1;GeneName=Bradi1g00847;transcript=eq;prot=eq - Bd1 No
CP00018G01070 cpa name=evm.TU.supercontig_18.107;pid=evm.TU.supercontig_18.107;prot=eq;transcript=eq + supercontig_18 No
CR02G06140 cre name=estExt_fgenesh1_pm.C_chromosome_20349;pid=377100;prot=eq;tid=377107;transcript=eq + chromosome_2 No
FV7G11180 fve Transducin beta-like protein 2 (WS-betaTRP) (probable) transcript=eq;prot=eq;pid=gene19404 - LG7 No
GM09G40560 gma 09 pid=16277882;transcript=eq;prot=eq;name=Glyma09g40560.1 - Gm09 No
GM18G45270 gma 18 pid=16310514;transcript=eq;prot=eq;name=Glyma18g45270.1 + Gm18 No
LJ1G026050 lja prot=eq;transcript=eq;scaffold=CM1255;name=chr1.CM1255.270.nc - chr1 No
MD00G129450 mdo transcript=eq;prot=eq;pid=MDP0000122241;tid=MDP0000122241;contig=MDC005516.455 + MDC005516.455 No
MD00G277140 mdo transcript=eq;prot=eq;pid=MDP0000241121;tid=MDP0000241121;contig=MDC011845.257 - MDC011845.257 No
MD00G320000 mdo transcript=eq;prot=eq;pid=MDP0000293746;tid=MDP0000293746;contig=MDC013570.295 - MDC013570.295 No
MD00G320050 mdo transcript=eq;prot=eq;pid=MDP0000293925;tid=MDP0000293925;contig=MDC013570.468 + MDC013570.468 No
MD00G320080 mdo transcript=eq;prot=eq;pid=MDP0000322005;tid=MDP0000322005;contig=MDC013570.482 + MDC013570.482 No
ME02441G00040 mes PACid=17987900;RNAname=cassava4.1_007854m;GeneName=cassava4.1_007854m.g;transcript=eq;prot=eq + scaffold02441 No
MRCC299_05G03950 mrcc299 name=EuGene.0500010395;pid=58662;prot=eq;tid=58662;transcript=eq + Chr_05 No
OS03G64110 osa WD domain, G%2Dbeta repeat domain containing protein, expressed transcript=eq;prot=eq; + 3 No
OSINDICA_03G61170 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009046; + Chr03 No
PP00234G00250 ppa NULL name=estExt_gwp_gw1.C_2340026,pid=195222,prot=eq,tid=195222 + scaffold_234 No
PT02G14710 ptr PACid=17345068;name=POPTR_0002s14900;alias=pt020304m; transcript=eq;prot=eq;protein_id=17345068; + scaffold_2 No
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