Gene family 
- Id
- HOM005044
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO010201 (19 genes in 17 species)
ORTHO047066 (2 genes in 2 species)
ORTHO057168 (2 genes in 1 species)
View all sub-families (3)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (2 genes)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (2 genes)
- mdo
- Malus domestica (4 genes)
- mes
- Manihot esculenta (2 genes)
- mtr
- Medicago truncatula (1 gene)
- osa
- Oryza sativa ssp. japonica (2 genes)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ptr
- Populus trichocarpa (2 genes)
- rco
- Ricinus communis (1 gene)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (2 genes)
- zma
- Zea mays (2 genes)
The gene family HOM005044 has 28 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM005044
Page 1 of 2, showing 20 records out of 28 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL6G13780 | aly | name=scaffold_601416.1;pid=909359;prot=eq;tid=940872 | + | scaffold_6 | No | |
| AT5G14030 | ath | translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;translocon-associated protein beta (TRAPB) family protein | transcript=eq;prot=eq; | + | 5 | No |
| BD2G03687 | bdi | pid=Bradi2g03687.2;tid=Bradi2g03687.2;GeneName=Bradi2g03687;transcript=eq;prot=eq | + | Bd2 | No | |
| BD2G39960 | bdi | pid=Bradi2g39960.1;tid=Bradi2g39960.1;GeneName=Bradi2g39960;transcript=eq;prot=eq | + | Bd2 | No | |
| CP00004G01120 | cpa | name=evm.TU.supercontig_4.112;pid=evm.TU.supercontig_4.112;prot=eq;transcript=eq | - | supercontig_4 | No | |
| CP00070G00930 | cpa | name=evm.TU.supercontig_70.93;pid=evm.TU.supercontig_70.93;prot=eq;transcript=eq | - | supercontig_70 | No | |
| FV6G51580 | fve | Translocon-associated protein subunit beta (TRAP-beta), Precursor (probable) | transcript=eq;prot=eq;pid=gene01373 | + | LG6 | No |
| GM16G05530 | gma | 16 | pid=16301585;transcript=eq;prot=eq;name=Glyma16g05530.1 | - | Gm16 | No |
| GM19G27250 | gma | 19 | pid=16312958;transcript=eq;prot=eq;name=Glyma19g27250.1 | + | Gm19 | No |
| MD00G317890 | mdo | transcript=eq;prot=eq;pid=MDP0000242101;tid=MDP0000242101;contig=MDC013464.188 | + | MDC013464.188 | No | |
| MD00G462040 | mdo | transcript=eq;prot=eq;pid=MDP0000245446;tid=MDP0000245446;contig=MDC021376.72 | - | MDC021376.72 | No | |
| MD09G000500 | mdo | transcript=eq;prot=eq;pid=MDP0000163104;tid=MDP0000163104;contig=MDC001494.456 | - | 9 | No | |
| MD17G000370 | mdo | transcript=eq;prot=eq;pid=MDP0000263586;tid=MDP0000263586;contig=MDC002619.349 | - | 17 | No | |
| ME00363G00050 | mes | PACid=17976108;RNAname=cassava4.1_016629m;GeneName=cassava4.1_016629m.g;transcript=eq;prot=eq | - | scaffold00363 | No | |
| ME05432G00140 | mes | PACid=17991315;RNAname=cassava4.1_016374m;GeneName=cassava4.1_016374m.g;transcript=eq;prot=eq | + | scaffold05432 | No | |
| MT7G083560 | mtr | Translocon-associated protein subunit beta (AHRD V1 ***- P23438); contains Interpro domain(s) IPR008856 Translocon-associated beta | transcript=eq;prot=eq;pid=Medtr7g083560.1; | + | 7 | No |
| OS01G01307 | osa | translocon%2Dassociated protein beta domain containing protein, expressed | transcript=eq;prot=eq; | + | 1 | No |
| OS05G01262 | osa | translocon%2Dassociated protein beta domain containing protein, expressed | transcript=eq;prot=eq; | - | 5 | No |
| OSINDICA_05G00250 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC019371; | - | Chr05 | No |
| PT01G32310 | ptr | PACid=17306546;name=POPTR_0001s33070;alias=pt040272m,estExt_fgenesh4_pg.C_LG_I2376; | transcript=eq;prot=eq;protein_id=17306546; | - | scaffold_1 | No |