Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004981 has 29 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G05380 aly name=fgenesh2_kg.5__435__AT3G26710.1;pid=484443;prot=eq;tid=484443 + scaffold_5 No
AT3G26710 ath cofactor assembly of complex C (CCB1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3529 (InterPro:IPR021919); Has 212 Blast hits to 212 proteins in 63 species: Archae - 0; Bacteria - 77; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).;cofactor assembly of complex C transcript=eq;prot=eq; + 3 No
BD3G36577 bdi pid=Bradi3g36577.1;tid=Bradi3g36577.1;GeneName=Bradi3g36577;transcript=eq;prot=eq + Bd3 No
CP00070G00620 cpa name=evm.TU.supercontig_70.62;pid=evm.TU.supercontig_70.62;prot=eq;transcript=eq + supercontig_70 No
CR16G02990 cre name=estExt_fgenesh2_kg.C_370043;pid=185128;prot=eq;tid=185128;transcript=eq + chromosome_16 No
FV6G51910 fve Aquaporin-7 (AQP-7) (similar to) transcript=eq;prot=eq;pid=gene01397 + LG6 No
GM02G07350 gma 02 pid=16247284;transcript=eq;prot=eq;name=Glyma02g07350.1 - Gm02 No
GM16G26340 gma 16 pid=16302954;transcript=eq;prot=eq;name=Glyma16g26340.1 - Gm16 No
MD00G089010 mdo transcript=eq;prot=eq;pid=MDP0000276122;tid=MDP0000276122;contig=MDC003792.382 - MDC003792.382 No
MD00G378480 mdo transcript=eq;prot=eq;pid=MDP0000334620;tid=MDP0000334620;contig=MDC017141.28 + MDC017141.28 No
MD16G006130 mdo transcript=eq;prot=eq;pid=MDP0000119341;tid=MDP0000119341;contig=MDC000907.279 - 16 No
ME02688G00150 mes PACid=17978650;RNAname=cassava4.1_013551m;GeneName=cassava4.1_013551m.g;transcript=eq;prot=eq - scaffold02688 No
MRCC299_10G03880 mrcc299 name=e_gw2.10.388.1;pid=85750;prot=eq;tid=85750;transcript=eq + Chr_10 No
MT7G084160 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004192 Ubiquinol cytochrome reductase transmembrane region transcript=eq;prot=eq;pid=Medtr7g084160.1; - 7 No
OL06G02540 olu NULL name=eugene.0600010250,pid=32191,prot=eq,tid=32191 + Chr_6 No
OS11G32320 osa CCB1, putative, expressed transcript=eq;prot=eq; + 11 No
OSINDICA_11G23640 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC035371; + Chr11 No
OT06G02830 ota name=OT06G02830;protein_id=CAL53542.1;prot=eq + chrom06 No
PP00084G00950 ppa NULL name=e_gw1.84.89.1,pid=130718,prot=eq,tid=130718 - scaffold_84 No
PT01G45800 ptr PACid=17328599;name=POPTR_0001s46750;alias=pt039429m; transcript=eq;prot=eq;protein_id=17328599; + scaffold_1 No
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