Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (5 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family HOM004980 has 29 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G31520 aly name=fgenesh2_kg.5__2545__AT3G60810.1;pid=486553;prot=eq;tid=486553 + scaffold_5 No
AT3G60810 ath unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1499 (InterPro:IPR010865); Has 444 Blast hits to 444 proteins in 143 species: Archae - 0; Bacteria - 268; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink). transcript=eq;prot=eq; + 3 No
BD1G00830 bdi pid=Bradi1g00830.1;tid=Bradi1g00830.1;GeneName=Bradi1g00830;transcript=eq;prot=eq + Bd1 No
CP00349G00040 cpa name=evm.TU.supercontig_349.4;pid=evm.TU.supercontig_349.4;prot=eq;transcript=eq - supercontig_349 No
CR11G00320 cre name=Chlre2_kg.scaffold_48000072;pid=152648;prot=eq;tid=152648;transcript=eq + chromosome_11 No
FV7G11110 fve CTP synthase (probable) transcript=eq;prot=eq;pid=gene19397 - LG7 No
GM01G34380 gma 01 pid=16245136;transcript=eq;prot=eq;name=Glyma01g34380.1 + Gm01 No
GM03G02720 gma 03 pid=16250916;transcript=eq;prot=eq;name=Glyma03g02720.1 - Gm03 No
GM08G39410 gma 08 pid=16273244;transcript=eq;prot=eq;name=Glyma08g39410.1 + Gm08 No
GM09G40540 gma 09 pid=16277880;transcript=eq;prot=eq;name=Glyma09g40540.1 - Gm09 No
GM14G07660 gma 14 pid=16294727;transcript=eq;prot=eq;name=Glyma14g07660.1 + Gm14 No
LJ0G454250 lja prot=eq;transcript=eq;scaffold=LjT25G12;name=LjT25G12.100.nc - chr0 No
LJ1G025980 lja partial;prot=eq;transcript=eq;scaffold=CM1255;name=chr1.CM1255.200.nc - chr1 No
MD00G269790 mdo transcript=eq;prot=eq;pid=MDP0000291249;tid=MDP0000291249;contig=MDC011556.236 + MDC011556.236 No
ME02441G00050 mes PACid=17987899;RNAname=cassava4.1_015651m;GeneName=cassava4.1_015651m.g;transcript=eq;prot=eq + scaffold02441 No
MRCC299_09G03590 mrcc299 name=e_gw2.09.501.1;pid=84637;prot=eq;tid=84637;transcript=eq + Chr_09 No
MT4G023550 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010865 Protein of unknown function DUF1499 transcript=eq;prot=eq;pid=Medtr4g023550.1; - 4 No
OL20G03030 olu NULL name=gwEuk.20.340.1,pid=7768,prot=eq,tid=7768 - Chr_20 No
OS03G64140 osa expressed protein transcript=eq;prot=eq; - 3 No
OSINDICA_03G61190 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009047; - Chr03 No
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