Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004924 has 29 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G02370 aly name=scaffold_300266.1;pid=896296;prot=eq;tid=927809 - scaffold_3 No
AL3G02870 aly name=fgenesh1_pg.C_scaffold_3000268;pid=340505;prot=eq;tid=340505 + scaffold_3 No
AL6G17450 aly name=scaffold_601811.1;pid=909754;prot=eq;tid=941267 + scaffold_6 No
AT5G17560 ath BolA-like family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BolA-like protein (InterPro:IPR002634); BEST Arabidopsis thaliana protein match is: BolA-like family protein (TAIR:AT1G55805.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;BolA-like family protein transcript=eq;prot=eq; + 5 No
BD1G42030 bdi pid=Bradi1g42030.1;tid=Bradi1g42030.1;GeneName=Bradi1g42030;transcript=eq;prot=eq + Bd1 No
CP02589G00010 cpa name=evm.TU.supercontig_2589.1;pid=evm.TU.supercontig_2589.1;prot=eq;transcript=eq + supercontig_2589 No
CR09G01810 cre name=au.g15365_t1;pid=297800;prot=eq;tid=297807;transcript=eq - chromosome_9 No
FV0G44210 fve BolA-like protein 1 (probable) transcript=eq;prot=eq;pid=gene21675 + scf0513070 No
GM02G00320 gma 02 pid=16246480;transcript=eq;prot=eq;name=Glyma02g00320.1 + Gm02 No
LJ0G039450 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_016408;name=LjSGA_016408.1.1 - LjSGA_016408 No
MD00G410490 mdo transcript=eq;prot=eq;pid=MDP0000130594;tid=MDP0000130594;contig=MDC018675.224 + MDC018675.224 No
MD00G410500 mdo transcript=eq;prot=eq;pid=MDP0000687335;tid=MDP0000687335;contig=MDC018675.259 - MDC018675.259 No
MD01G020320 mdo transcript=eq;prot=eq;pid=MDP0000941318;tid=MDP0000941318;contig=MDC003957.463 + 1 No
ME03614G01390 mes PACid=17966107;RNAname=cassava4.1_017012m;GeneName=cassava4.1_017012m.g;transcript=eq;prot=eq + scaffold03614 No
ME11297G00810 mes PACid=17969229;RNAname=cassava4.1_016996m;GeneName=cassava4.1_016996m.g;transcript=eq;prot=eq + scaffold11297 No
MRCC299_06G01440 mrcc299 name=EuGene.0600010153;pid=59151;prot=eq;tid=59151;transcript=eq - Chr_06 No
OL12G01580 olu NULL name=gwEuk.12.366.1,pid=8637,prot=eq,tid=8637 - Chr_12 No
OS06G28970 osa bolA, putative, expressed transcript=eq;prot=eq; + 6 No
OSINDICA_06G25370 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC010745; + Chr06 No
PP00086G00960 ppa NULL name=estExt_fgenesh2_pg.C_860070,pid=233509,prot=eq,tid=233509 - scaffold_86 No
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