Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004880 has 29 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G34710 aly name=fgenesh1_pm.C_scaffold_5002324;pid=324780;prot=eq;tid=324780 - scaffold_5 No
AT5G26880 ath Root Specific;AGAMOUS-like 26 transcript=eq;prot=eq; - 5 No
BD3G39920 bdi RNA methyltransferase activity (Blast2GO) pid=Bradi3g39920.1;tid=Bradi3g39920.1;GeneName=Bradi3g39920;transcript=eq;prot=eq - Bd3 No
CP00234G00110 cpa name=evm.TU.supercontig_234.11;pid=evm.TU.supercontig_234.11;prot=eq;transcript=eq - supercontig_234 No
CR10G00050 cre name=au.g5_t1;pid=281393;prot=eq;tid=281400;transcript=eq + chromosome_10 No
FV0G57360 fve Homeobox protein prophet of Pit-1 (PROP-1) (probable) transcript=eq;prot=eq;pid=gene33293 + scf0511768 Yes
FV1G23310 fve Polycomb group protein Psc (probable) transcript=eq;prot=eq;pid=gene10409 - LG1 Yes
FV7G02020 fve Uncharacterized tRNA/rRNA methyltransferase slr0992 (similar to) transcript=eq;prot=eq;pid=gene26969 + LG7 No
GM08G16210 gma 08 pid=16271347;transcript=eq;prot=eq;name=Glyma08g16210.1 + Gm08 No
LJ0G029780 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_014085;name=LjSGA_014085.1 - LjSGA_014085 No
MD07G000490 mdo transcript=eq;prot=eq;pid=MDP0000155839;tid=MDP0000155839;contig=MDC017528.105 + 7 No
ME11106G00360 mes PACid=17986773;RNAname=cassava4.1_014129m;GeneName=cassava4.1_014129m.g;transcript=eq;prot=eq + scaffold11106 No
MRCC299_16G00640 mrcc299 name=EuGene.1600010066;pid=64705;prot=eq;tid=64705;transcript=eq + Chr_16 No
MT3G027870 mtr Uncharacterized tRNA/rRNA methyltransferase slr0992 (AHRD V1 *-*- P74516); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU transcript=eq;prot=eq;pid=Medtr3g027870.1; + 3 No
OL09G00270 olu NULL name=eugene.0900010026,pid=33322,prot=eq,tid=33322 + Chr_9 No
OS08G39600 osa RNA methyltransferase, TrmH family protein, putative, expressed transcript=eq;prot=eq; - 8 No
OSINDICA_00G18140 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFSC046750; - Scaffold012490 No
OSINDICA_08G38000 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC027235; - Chr08 No
OT09G00260 ota tRNA/rRNA methyltransferase (ISS); name=OT09G00260;protein_id=CAL55185.1;prot=eq + chrom09 No
PP00010G01180 ppa NULL name=e_gw1.10.121.1,pid=114578,prot=eq,tid=114578 - scaffold_10 No
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