Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004870 has 29 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G07270 aly name=Al_scaffold_0001_713;pid=878946;prot=eq;tid=910459 + scaffold_1 No
AL2G06440 aly name=fgenesh1_pg.C_scaffold_2000493;pid=338394;prot=eq;tid=338394 - scaffold_2 No
AL4G10460 aly name=fgenesh2_kg.4__645__AT1G07700.2;pid=481585;prot=eq;tid=481585 + scaffold_4 No
AL8G02500 aly name=scaffold_800260.1;pid=916860;prot=eq;tid=948373 + scaffold_8 No
AT1G07700 ath Thioredoxin superfamily protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G19730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Thioredoxin superfamily protein transcript=eq;prot=eq; + 1 No
BD3G46420 bdi pid=Bradi3g46420.1;tid=Bradi3g46420.1;GeneName=Bradi3g46420;transcript=eq;prot=eq - Bd3 No
CP00049G00200 cpa name=evm.TU.supercontig_49.20;pid=evm.TU.supercontig_49.20;prot=eq;transcript=eq - supercontig_49 No
CR01G11910 cre name=estExt_fgenesh2_kg.C_270057;pid=184627;prot=eq;tid=184627;transcript=eq - chromosome_1 No
FV2G33850 fve Thioredoxin H-type 3 (Trx-H-3) (probable) transcript=eq;prot=eq;pid=gene09099 - LG2 No
FV2G33870 fve Pentatricopeptide repeat-containing protein At2g04860 (probable) transcript=eq;prot=eq;pid=gene09097 - LG2 No
GM04G04130 gma 04 pid=16254803;transcript=eq;prot=eq;name=Glyma04g04130.1 + Gm04 No
GM06G04300 gma 06 pid=16261671;transcript=eq;prot=eq;name=Glyma06g04300.1 + Gm06 No
LJ0G463790 lja prot=eq;transcript=eq;scaffold=LjT07K13;name=LjT07K13.40.nd + chr0 No
MD00G075540 mdo transcript=eq;prot=eq;pid=MDP0000173667;tid=MDP0000173667;contig=MDC003143.134 + MDC003143.134 No
MD00G433520 mdo transcript=eq;prot=eq;pid=MDP0000417792;tid=MDP0000417792;contig=MDC019824.74 + MDC019824.74 No
MD07G011390 mdo transcript=eq;prot=eq;pid=MDP0000668704;tid=MDP0000668704;contig=MDC017905.224 - 7 No
MD15G002900 mdo transcript=eq;prot=eq;pid=MDP0000520335;tid=MDP0000520335;contig=MDC010017.238 - 15 No
ME04287G00020 mes PACid=17981263;RNAname=cassava4.1_015817m;GeneName=cassava4.1_015817m.g;transcript=eq;prot=eq - scaffold04287 No
MT3G101740 mtr Thioredoxin H-type 3 (AHRD V1 ***- Q42403); contains Interpro domain(s) IPR015467 Thioredoxin, core transcript=eq;prot=eq;pid=Medtr3g101740.1; + 3 No
OS02G35900 osa thioredoxin, putative, expressed transcript=eq;prot=eq; - 2 No
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