Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM004854 has 29 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 29 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G11620 aly name=fgenesh2_kg.2__775__AT5G51300.3;pid=475645;prot=eq;tid=475645 + scaffold_2 No
AL8G15510 aly name=fgenesh2_kg.8__1018__AT5G51300.2;pid=495202;prot=eq;tid=495202 - scaffold_8 No
AT5G51300 ath splicing factor-related; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), RNA recognition motif, RNP-1 (InterPro:IPR000504), K Homology, type 1 (InterPro:IPR004088), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G09660.1); Has 986600 Blast hits to 958298 proteins in 35154 species: Archae - 20434; Bacteria - 569558; Metazoa - 210103; Fungi - 32531; Plants - 60683; Viruses - 65853; Other Eukaryotes - 27438 (source: NCBI BLink).;splicing factor-related transcript=eq;prot=eq; - 5 No
BD5G07850 bdi KH domain-containing protein similar to splicing factor-related, KH domain-containing protein, [Arabidopsis thaliana] AT5G51300 pid=Bradi5g07850.2;tid=Bradi5g07850.2;GeneName=Bradi5g07850;transcript=eq;prot=eq + Bd5 No
CP00013G02710 cpa name=evm.TU.supercontig_13.271;pid=evm.TU.supercontig_13.271;prot=eq;transcript=eq + supercontig_13 No
FV6G16370 fve Branchpoint-bridging protein (probable) transcript=eq;prot=eq;pid=gene05953 - LG6 No
FV7G32530 fve Branchpoint-bridging protein (probable) transcript=eq;prot=eq;pid=gene21192 + LG7 No
GM09G36510 gma 09 pid=16277408;transcript=eq;prot=eq;name=Glyma09g36510.1 - Gm09 No
GM12G00850 gma 12 pid=16285892;transcript=eq;prot=eq;name=Glyma12g00850.1 + Gm12 No
LJ0G153140 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_048053;name=LjSGA_048053.1 + LjSGA_048053 No
MD00G277960 mdo transcript=eq;prot=eq;pid=MDP0000558834;tid=MDP0000558834;contig=MDC011880.457 + MDC011880.457 No
MD00G277970 mdo transcript=eq;prot=eq;pid=MDP0000832994;tid=MDP0000832994;contig=MDC011880.463 - MDC011880.463 No
ME11373G00050 mes PACid=17974620;RNAname=cassava4.1_001926m;GeneName=cassava4.1_001926m.g;transcript=eq;prot=eq + scaffold11373 No
MRCC299_06G06020 mrcc299 name=fgenesh2_pg.C_Chr_06000390;pid=101189;prot=eq;tid=101189;transcript=eq + Chr_06 No
OSINDICA_04G23580 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC040694; + Chr04 No
PP00009G00890 ppa NULL name=fgenesh1_pg.scaffold_9000097,pid=66060,prot=eq,tid=66060 - scaffold_9 No
PP00087G00630 ppa NULL name=estExt_gwp_gw1.C_870043,pid=185832,prot=eq,tid=185832 - scaffold_87 No
PP00138G00880 ppa NULL name=estExt_gwp_gw1.C_1380136,pid=189930,prot=eq,tid=189930 + scaffold_138 No
PT01G00660 ptr PACid=17314778;name=POPTR_0001s00850;alias=pt037480m; transcript=eq;prot=eq;protein_id=17314778; - scaffold_1 No
PT03G09690 ptr PACid=17312239;name=POPTR_0003s10640;alias=pt022796m; transcript=eq;prot=eq;protein_id=17312239; + scaffold_3 No
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