Gene family 
- Id
- HOM004823
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO012656 (15 genes in 13 species)
ORTHO028171 (4 genes in 3 species)
ORTHO045079 (2 genes in 2 species)
View all sub-families (3)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (2 genes)
- cpa
- Carica papaya (2 genes)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (4 genes)
- lja
- Lotus japonicus (2 genes)
- mdo
- Malus domestica (3 genes)
- mes
- Manihot esculenta (2 genes)
- mtr
- Medicago truncatula (3 genes)
- ptr
- Populus trichocarpa (5 genes)
- rco
- Ricinus communis (2 genes)
- tca
- Theobroma cacao (1 gene)
- vvi
- Vitis vinifera (1 gene)
The gene family HOM004823 has 30 genes in 13 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM004823
Page 1 of 2, showing 20 records out of 30 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL6G15250 | aly | name=fgenesh2_kg.6__1522__AT5G15430.1;pid=488388;prot=eq;tid=488388 | + | scaffold_6 | No | |
| AL7G38940 | aly | name=fgenesh2_kg.7__3480__AT5G39380.1;pid=494047;prot=eq;tid=494047 | + | scaffold_7 | No | |
| AT5G15430 | ath | Plant calmodulin-binding protein-related; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT5G39380.1); Has 2981 Blast hits to 2520 proteins in 284 species: Archae - 2; Bacteria - 98; Metazoa - 1113; Fungi - 263; Plants - 238; Viruses - 17; Other Eukaryotes - 1250 (source: NCBI BLink).;Plant calmodulin-binding protein-related | transcript=eq;prot=eq; | + | 5 | No |
| AT5G39380 | ath | Plant calmodulin-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT5G15430.1); Has 1562 Blast hits to 1366 proteins in 187 species: Archae - 0; Bacteria - 45; Metazoa - 751; Fungi - 101; Plants - 192; Viruses - 10; Other Eukaryotes - 463 (source: NCBI BLink).;Plant calmodulin-binding protein-related | transcript=eq;prot=eq; | - | 5 | No |
| CP00014G01450 | cpa | name=evm.TU.supercontig_14.145;pid=evm.TU.supercontig_14.145;prot=eq;transcript=eq | + | supercontig_14 | No | |
| CP01213G00020 | cpa | name=evm.TU.supercontig_1213.2;pid=evm.TU.supercontig_1213.2;prot=eq;transcript=eq | + | supercontig_1213 | No | |
| FV6G43270 | fve | Myb-like protein V (probable) | transcript=eq;prot=eq;pid=gene04345 | - | LG6 | No |
| GM08G26390 | gma | 08 | pid=16272530;transcript=eq;prot=eq;name=Glyma08g26390.1 | + | Gm08 | No |
| GM13G05890 | gma | 13 | pid=16289788;transcript=eq;prot=eq;name=Glyma13g05890.1 | + | Gm13 | No |
| GM18G49910 | gma | 18 | pid=16310982;transcript=eq;prot=eq;name=Glyma18g49910.1 | + | Gm18 | No |
| GM19G03400 | gma | 19 | pid=16311768;transcript=eq;prot=eq;name=Glyma19g03400.1 | + | Gm19 | No |
| LJ0G016400 | lja | prot=eq;transcript=eq;scaffold=LjSGA_010310;name=LjSGA_010310.1 | + | LjSGA_010310 | No | |
| LJ2G012020 | lja | prot=eq;transcript=eq;scaffold=LjT16J19;name=chr2.LjT16J19.70.nc | - | chr2 | No | |
| MD00G402470 | mdo | transcript=eq;prot=eq;pid=MDP0000130347;tid=MDP0000130347;contig=MDC018274.391 | + | MDC018274.391 | Yes | |
| MD09G004390 | mdo | transcript=eq;prot=eq;pid=MDP0000157865;tid=MDP0000157865;contig=MDC001371.254 | + | 9 | No | |
| MD17G004850 | mdo | transcript=eq;prot=eq;pid=MDP0000376617;tid=MDP0000376617;contig=MDC002719.93 | + | 17 | No | |
| ME06609G00480 | mes | PACid=17983535;RNAname=cassava4.1_003317m;GeneName=cassava4.1_003317m.g;transcript=eq;prot=eq | - | scaffold06609 | No | |
| ME08359G01890 | mes | PACid=17969205;RNAname=cassava4.1_031878m;GeneName=cassava4.1_031878m.g;transcript=eq;prot=eq | - | scaffold08359 | No | |
| MT6G013790 | mtr | Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant | transcript=eq;prot=eq;pid=Medtr6g013790.1; | + | 6 | No |
| MT7G012290 | mtr | Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant | transcript=eq;prot=eq;pid=Medtr7g012290.1; | + | 7 | No |