Gene family  

Sub-families
ORTHO012656 (15 genes in 13 species)
ORTHO028171 (4 genes in 3 species)
ORTHO045079 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (3 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (2 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family HOM004823 has 30 genes in 13 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 30 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G15250 aly name=fgenesh2_kg.6__1522__AT5G15430.1;pid=488388;prot=eq;tid=488388 + scaffold_6 No
AL7G38940 aly name=fgenesh2_kg.7__3480__AT5G39380.1;pid=494047;prot=eq;tid=494047 + scaffold_7 No
AT5G15430 ath Plant calmodulin-binding protein-related; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT5G39380.1); Has 2981 Blast hits to 2520 proteins in 284 species: Archae - 2; Bacteria - 98; Metazoa - 1113; Fungi - 263; Plants - 238; Viruses - 17; Other Eukaryotes - 1250 (source: NCBI BLink).;Plant calmodulin-binding protein-related transcript=eq;prot=eq; + 5 No
AT5G39380 ath Plant calmodulin-binding protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT5G15430.1); Has 1562 Blast hits to 1366 proteins in 187 species: Archae - 0; Bacteria - 45; Metazoa - 751; Fungi - 101; Plants - 192; Viruses - 10; Other Eukaryotes - 463 (source: NCBI BLink).;Plant calmodulin-binding protein-related transcript=eq;prot=eq; - 5 No
CP00014G01450 cpa name=evm.TU.supercontig_14.145;pid=evm.TU.supercontig_14.145;prot=eq;transcript=eq + supercontig_14 No
CP01213G00020 cpa name=evm.TU.supercontig_1213.2;pid=evm.TU.supercontig_1213.2;prot=eq;transcript=eq + supercontig_1213 No
FV6G43270 fve Myb-like protein V (probable) transcript=eq;prot=eq;pid=gene04345 - LG6 No
GM08G26390 gma 08 pid=16272530;transcript=eq;prot=eq;name=Glyma08g26390.1 + Gm08 No
GM13G05890 gma 13 pid=16289788;transcript=eq;prot=eq;name=Glyma13g05890.1 + Gm13 No
GM18G49910 gma 18 pid=16310982;transcript=eq;prot=eq;name=Glyma18g49910.1 + Gm18 No
GM19G03400 gma 19 pid=16311768;transcript=eq;prot=eq;name=Glyma19g03400.1 + Gm19 No
LJ0G016400 lja prot=eq;transcript=eq;scaffold=LjSGA_010310;name=LjSGA_010310.1 + LjSGA_010310 No
LJ2G012020 lja prot=eq;transcript=eq;scaffold=LjT16J19;name=chr2.LjT16J19.70.nc - chr2 No
MD00G402470 mdo transcript=eq;prot=eq;pid=MDP0000130347;tid=MDP0000130347;contig=MDC018274.391 + MDC018274.391 Yes
MD09G004390 mdo transcript=eq;prot=eq;pid=MDP0000157865;tid=MDP0000157865;contig=MDC001371.254 + 9 No
MD17G004850 mdo transcript=eq;prot=eq;pid=MDP0000376617;tid=MDP0000376617;contig=MDC002719.93 + 17 No
ME06609G00480 mes PACid=17983535;RNAname=cassava4.1_003317m;GeneName=cassava4.1_003317m.g;transcript=eq;prot=eq - scaffold06609 No
ME08359G01890 mes PACid=17969205;RNAname=cassava4.1_031878m;GeneName=cassava4.1_031878m.g;transcript=eq;prot=eq - scaffold08359 No
MT6G013790 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant transcript=eq;prot=eq;pid=Medtr6g013790.1; + 6 No
MT7G012290 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant transcript=eq;prot=eq;pid=Medtr7g012290.1; + 7 No
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