Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004793 has 30 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 30 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G10210 aly name=fgenesh2_kg.3__1024__AT3G09960.1;pid=478323;prot=eq;tid=478323 + scaffold_3 No
AL3G10220 aly name=fgenesh2_kg.3__1025__AT3G09970.1;pid=478324;prot=eq;tid=478324 + scaffold_3 No
AL7G19170 aly name=scaffold_702044.1;pid=914302;prot=eq;tid=945815 + scaffold_7 No
AT3G09960 ath Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT3G09970.1); Has 1323 Blast hits to 1323 proteins in 439 species: Archae - 25; Bacteria - 686; Metazoa - 28; Fungi - 33; Plants - 156; Viruses - 12; Other Eukaryotes - 383 (source: NCBI BLink).;Calcineurin-like metallo-phosphoesterase superfamily protein transcript=eq;prot=eq; + 3 No
AT3G09970 ath Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT3G09960.1); Has 1009 Blast hits to 1009 proteins in 371 species: Archae - 12; Bacteria - 594; Metazoa - 24; Fungi - 11; Plants - 146; Viruses - 12; Other Eukaryotes - 210 (source: NCBI BLink).;Calcineurin-like metallo-phosphoesterase superfamily protein transcript=eq;prot=eq; + 3 No
BD5G09180 bdi protein serine/threonine phosphatase activity (Blast2GO) pid=Bradi5g09180.1;tid=Bradi5g09180.1;GeneName=Bradi5g09180;transcript=eq;prot=eq - Bd5 No
CP00005G00590 cpa name=evm.TU.supercontig_5.59;pid=evm.TU.supercontig_5.59;prot=eq;transcript=eq + supercontig_5 No
GM10G07800 gma 10 pid=16278917;transcript=eq;prot=eq;name=Glyma10g07800.1 - Gm10 No
GM13G21640 gma 13 pid=16291099;transcript=eq;prot=eq;name=Glyma13g21640.1 - Gm13 No
LJ0G211640 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_068204;name=LjSGA_068204.1.1 + LjSGA_068204 No
MD00G441180 mdo transcript=eq;prot=eq;pid=MDP0000131572;tid=MDP0000131572;contig=MDC020208.334 - MDC020208.334 No
MD00G441220 mdo transcript=eq;prot=eq;pid=MDP0000218397;tid=MDP0000218397;contig=MDC020208.387 - MDC020208.387 No
ME06550G00530 mes PACid=17961089;RNAname=cassava4.1_012125m;GeneName=cassava4.1_012125m.g;transcript=eq;prot=eq - scaffold06550 No
ME06550G00540 mes PACid=17961058;RNAname=cassava4.1_033505m;GeneName=cassava4.1_033505m.g;transcript=eq;prot=eq - scaffold06550 No
ME06550G00550 mes PACid=17961055;RNAname=cassava4.1_027685m;GeneName=cassava4.1_027685m.g;transcript=eq;prot=eq - scaffold06550 No
MRCC299_06G01540 mrcc299 name=e_gw2.06.480.1;pid=82680;prot=eq;tid=82680;transcript=eq - Chr_06 No
OS04G33470 osa Ser%2FThr protein phosphatase family protein, putative, expressed transcript=eq;prot=eq; - 4 No
OSINDICA_04G25560 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC017438; - Chr04 No
PP00118G00920 ppa NULL name=e_gw1.118.67.1,pid=135304,prot=eq,tid=135304 + scaffold_118 No
PT02G15570 ptr PACid=17307500;name=POPTR_0002s15760;alias=pt020948m,estExt_fgenesh4_pm.C_LG_II0705; transcript=eq;prot=eq;protein_id=17307500; - scaffold_2 No
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