Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family HOM004702 has 30 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 30 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G06550 aly name=scaffold_24800001.1;pid=920395;prot=eq;tid=951908 - scaffold_248 No
AL3G04300 aly name=fgenesh2_kg.3__430__AT3G04650.1;pid=477729;prot=eq;tid=477729 + scaffold_3 No
AT3G04650 ath FAD/NAD(P)-binding oxidoreductase family protein; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT1G56000.1); Has 902 Blast hits to 899 proteins in 231 species: Archae - 14; Bacteria - 382; Metazoa - 7; Fungi - 2; Plants - 133; Viruses - 0; Other Eukaryotes - 364 (source: NCBI BLink).;FAD/NAD(P)-binding oxidoreductase family protein transcript=eq;prot=eq; + 3 No
BD1G23880 bdi pid=Bradi1g23880.1;tid=Bradi1g23880.1;GeneName=Bradi1g23880;transcript=eq;prot=eq - Bd1 No
CP00736G00020 cpa name=evm.TU.supercontig_736.2;pid=evm.TU.supercontig_736.2;prot=eq;transcript=eq - supercontig_736 No
CR03G12170 cre name=Chlre2_kg.scaffold_19000144;pid=147470;prot=eq;tid=147470;transcript=eq - chromosome_3 No
FV4G12220 fve FAD-dependent cmnm(5)s(2)U34 oxidoreductase (probable) transcript=eq;prot=eq;pid=gene06781 + LG4 No
GM19G43510 gma 19 pid=16314804;transcript=eq;prot=eq;name=Glyma19g43510.1 - Gm19 No
LJ0G069440 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_023917;name=LjSGA_023917.1 - LjSGA_023917 No
MD04G018420 mdo transcript=eq;prot=eq;pid=MDP0000195207;tid=MDP0000195207;contig=MDC014084.122 - 4 No
ME03802G00490 mes PACid=17989390;RNAname=cassava4.1_021343m;GeneName=cassava4.1_021343m.g;transcript=eq;prot=eq + scaffold03802 No
ME03802G00500 mes PACid=17989347;RNAname=cassava4.1_014562m;GeneName=cassava4.1_014562m.g;transcript=eq;prot=eq + scaffold03802 No
MRCC299_07G03420 mrcc299 name=EuGene.0700010343;pid=60058;prot=eq;tid=60058;transcript=eq - Chr_07 No
MT1G106590 mtr GRAS family transcription factor (AHRD V1 *--- B9GM40_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor transcript=eq;prot=eq;pid=Medtr1g106590.1; - 1 No
OL07G04670 olu NULL name=eugene.0700010471,pid=32874,prot=eq,tid=32874 + Chr_7 No
OS12G40540 osa FAD dependent oxidoreductase, putative, expressed transcript=eq;prot=eq; - 12 No
OSINDICA_12G28520 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC033662; - Chr12 No
OT07G04630 ota name=OT07G04630;protein_id=CAL54736.1;prot=eq - chrom07 No
PP00025G01070 ppa NULL name=e_gw1.25.59.1,pid=118689,prot=eq,tid=118689 + scaffold_25 No
PP00141G00430 ppa NULL name=fgenesh1_pg.scaffold_141000046,pid=86037,prot=eq,tid=86037 - scaffold_141 Yes
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