Gene family  

Sub-families
ORTHO004258 (27 genes in 25 species)
ORTHO056810 (2 genes in 1 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004652 has 30 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 30 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G29120 aly name=fgenesh2_kg.1__2954__AT1G27980.1;pid=473000;prot=eq;tid=473000 + scaffold_1 No
AT1G27980 ath dihydrosphingosine phosphate lyase (DPL1); FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: sphingolipid catabolic process, cellular amino acid metabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase (TAIR:AT5G17330.1); Has 6215 Blast hits to 6205 proteins in 1686 species: Archae - 244; Bacteria - 4383; Metazoa - 292; Fungi - 491; Plants - 296; Viruses - 3; Other Eukaryotes - 506 (source: NCBI BLink).;dihydrosphingosine phosphate lyase transcript=eq;prot=eq; + 1 No
BD2G03740 bdi sphinganine-1-phosphate aldolase activity (Blast2GO) pid=Bradi2g03740.1;tid=Bradi2g03740.1;GeneName=Bradi2g03740;transcript=eq;prot=eq - Bd2 No
CP35206G00010 cpa name=evm.TU.contig_35206.1;pid=evm.TU.contig_35206.1;prot=eq;transcript=eq + contig_35206 No
CR03G01570 cre name=au.g10256_t1;pid=292358;prot=eq;tid=292365;transcript=eq - chromosome_3 No
FV0G13160 fve Sphingosine-1-phosphate lyase (SP-lyase) (putative) transcript=eq;prot=eq;pid=gene07211 + scf0513160 No
GM02G10750 gma 02 pid=16247659;transcript=eq;prot=eq;name=Glyma02g10750.1 - Gm02 No
GM18G52070 gma 18 pid=16311199;transcript=eq;prot=eq;name=Glyma18g52070.1 + Gm18 No
LJ0G389620 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_142670;name=LjSGA_142670.1 - LjSGA_142670 No
MD00G481680 mdo transcript=eq;prot=eq;pid=MDP0000422184;tid=MDP0000422184;contig=MDC022499.235 - MDC022499.235 No
MD00G501460 mdo transcript=eq;prot=eq;pid=MDP0000401689;tid=MDP0000401689;contig=MDC026928.19 - MDC026928.19 No
MD13G009390 mdo transcript=eq;prot=eq;pid=MDP0000143661;tid=MDP0000143661;contig=MDC027667.11 + 13 No
ME06711G00630 mes PACid=17961592;RNAname=cassava4.1_005044m;GeneName=cassava4.1_005044m.g;transcript=eq;prot=eq - scaffold06711 No
MRCC299_01G01530 mrcc299 name=EuGene.0100010160;pid=54933;prot=eq;tid=54933;transcript=eq - Chr_01 No
MT7G022310 mtr Sphingosine-1-phosphate lyase (AHRD V1 **** Q549V9_ARATH); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase transcript=eq;prot=eq;pid=Medtr7g022310.1; + 7 No
OL02G03250 olu NULL name=e_gwEuk.2.155.1,pid=35979,prot=eq,tid=35979 - Chr_2 No
OL02G03260 olu NULL name=eugene1.1.0200012690,prot=none - Chr_2 No
OS01G01080 osa decarboxylase, putative, expressed transcript=eq;prot=eq; + 1 No
OSINDICA_01G00110 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC000010; + Chr01 No
OT02G04260 ota putative sphingosine-1-phosphate lyase (ISS); name=OT02G04260;protein_id=CAL52301.1;prot=eq + chrom02 No
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