Gene family  

Sub-families
ORTHO004410 (27 genes in 18 species)
ORTHO074861 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM004605 has 31 genes in 18 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 31 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G36950 aly name=fgenesh2_kg.3__3241__AT2G19260.1;pid=480540;prot=eq;tid=480540 - scaffold_3 No
AT2G19260 ath RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, CW-type (InterPro:IPR011124), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: metalloendopeptidases;zinc ion binding;DNA binding (TAIR:AT5G35210.1); Has 1801 Blast hits to 1744 proteins in 174 species: Archae - 2; Bacteria - 8; Metazoa - 1171; Fungi - 140; Plants - 342; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).;RING/FYVE/PHD zinc finger superfamily protein transcript=eq;prot=eq; + 2 No
BD4G14610 bdi H3/H4 histone acetyltransferase activity (Blast2GO) pid=Bradi4g14610.1;tid=Bradi4g14610.1;GeneName=Bradi4g14610;transcript=eq;prot=eq - Bd4 No
FV5G15860 fve PHD and RING finger domain-containing protein 1 (probable) transcript=eq;prot=eq;pid=gene09304 + LG5 No
FV5G26590 fve PHD and RING finger domain-containing protein 1 (probable) transcript=eq;prot=eq;pid=gene29090 - LG5 No
GM04G00320 gma 04 pid=16254326;transcript=eq;prot=eq;name=Glyma04g00320.1 - Gm04 No
GM06G00370 gma 06 pid=16261208;transcript=eq;prot=eq;name=Glyma06g00370.1 - Gm06 No
LJ1G033020 lja prot=eq;transcript=eq;scaffold=CM0017;name=chr1.CM0017.230.nc - chr1 No
MD02G007330 mdo transcript=eq;prot=eq;pid=MDP0000247633;tid=MDP0000247633;contig=MDC003413.764 - 2 No
MD13G028180 mdo transcript=eq;prot=eq;pid=MDP0000311076;tid=MDP0000311076;contig=MDC019719.232 + 13 No
ME03049G01070 mes PACid=17959809;RNAname=cassava4.1_031343m;GeneName=cassava4.1_031343m.g;transcript=eq;prot=eq - scaffold03049 No
ME11232G00050 mes PACid=17992102;RNAname=cassava4.1_021079m;GeneName=cassava4.1_021079m.g;transcript=eq;prot=eq + scaffold11232 No
MT3G100350 mtr PHD and RING finger domain-containing protein 1 (AHRD V1 *-*- A6H619); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type transcript=eq;prot=eq;pid=Medtr3g100350.1; + 3 No
OS04G34720 osa PHD%2Dfinger domain containing protein, putative, expressed transcript=eq;prot=eq; + 4 No
OSINDICA_04G26860 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC017527; + Chr04 No
PT06G07320 ptr PACid=17307077;name=POPTR_0006s07510;alias=pt017185m; transcript=eq;prot=eq;protein_id=17307077; + scaffold_6 No
PT06G27510 ptr PACid=17337555;name=POPTR_0006s29220;alias=pt017627m,eugene3.01470065; transcript=eq;prot=eq;protein_id=17337555; + scaffold_6 No
PT18G12950 ptr PACid=17303855;name=POPTR_0018s13900;alias=pt009250m; transcript=eq;prot=eq;protein_id=17303855; + scaffold_18 Yes
PT18G12960 ptr PACid=17340518;name=POPTR_0018s13910;alias=pt008284m,estExt_fgenesh4_pg.C_LG_XVIII1191; transcript=eq;prot=eq;protein_id=17340518; + scaffold_18 No
RC28226G00180 rco name=28226.m000848;gene=28226.t000018;note=28226.t000018;transcript=eq;prot=eq - 28226 No
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