Gene family  

Sub-families
ORTHO006487 (24 genes in 18 species)
ORTHO042292 (2 genes in 2 species)
ORTHO067049 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM004552 has 31 genes in 18 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 31 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G46110 aly name=scaffold_104899.1;pid=892105;prot=eq;tid=923618 + scaffold_1 No
AL4G16570 aly name=fgenesh2_kg.4__1152__AT2G31670.1;pid=482092;prot=eq;tid=482092 - scaffold_4 No
AT1G51360 ath Involved in defense against fungal pathogens and located in cytosol.;dimeric A/B barrel domainS-protein 1 transcript=eq;prot=eq; + 1 No
AT2G31670 ath Stress responsive alpha-beta barrel domain protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Stress responsive alpha-beta barrel (InterPro:IPR013097), Dimeric alpha-beta barrel (InterPro:IPR011008); BEST Arabidopsis thaliana protein match is: dimeric A/B barrel domainS-protein 1 (TAIR:AT1G51360.1); Has 222 Blast hits to 216 proteins in 57 species: Archae - 0; Bacteria - 79; Metazoa - 0; Fungi - 4; Plants - 128; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).;Stress responsive alpha-beta barrel domain protein transcript=eq;prot=eq; - 2 No
BD1G21700 bdi pid=Bradi1g21700.1;tid=Bradi1g21700.1;GeneName=Bradi1g21700;transcript=eq;prot=eq - Bd1 No
CP00028G00640 cpa name=evm.TU.supercontig_28.64;pid=evm.TU.supercontig_28.64;prot=eq;transcript=eq + supercontig_28 No
FV1G09940 fve Acyl-CoA-binding protein (ACBP) (similar to) transcript=eq;prot=eq;pid=gene12734 + LG1 No
FV1G09950 fve Probable protein Pop3 transcript=eq;prot=eq;pid=gene12735 + LG1 No
GM13G16870 gma 13 pid=16290539;transcript=eq;prot=eq;name=Glyma13g16870.1 + Gm13 No
GM15G19370 gma 15 pid=16299310;transcript=eq;prot=eq;name=Glyma15g19370.1 + Gm15 No
GM17G05840 gma 17 pid=16304548;transcript=eq;prot=eq;name=Glyma17g05840.1 - Gm17 No
GM17G05850 gma 17 pid=16304550;transcript=eq;prot=eq;name=Glyma17g05850.1 - Gm17 No
LJ0G024300 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_012675;name=LjSGA_012675.2 + LjSGA_012675 No
LJ0G447620 lja prot=eq;transcript=eq;scaffold=LjT02E24;name=LjT02E24.120.nc - chr0 No
LJ3G029710 lja prot=eq;transcript=eq;scaffold=CM1144;name=chr3.CM1144.280.nd - chr3 No
MD00G158320 mdo transcript=eq;prot=eq;pid=MDP0000180709;tid=MDP0000180709;contig=MDC006797.192 - MDC006797.192 No
ME01782G00020 mes PACid=17993894;RNAname=cassava4.1_024439m;GeneName=cassava4.1_024439m.g;transcript=eq;prot=eq + scaffold01782 No
ME10493G00550 mes PACid=17990760;RNAname=cassava4.1_013959m;GeneName=cassava4.1_013959m.g;transcript=eq;prot=eq - scaffold10493 No
OS07G41810 osa stress responsive A%2FB Barrel domain containing protein, expressed transcript=eq;prot=eq; + 7 No
OS07G41820 osa stress responsive A%2FB Barrel domain containing protein, expressed transcript=eq;prot=eq; + 7 No
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