Gene family  

Sub-families
ORTHO008626 (21 genes in 18 species)
ORTHO024266 (5 genes in 1 species)
ORTHO031705 (3 genes in 3 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (8 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004542 has 31 genes in 18 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 31 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G24120 aly name=scaffold_402486.1;pid=902985;prot=eq;tid=934498 - scaffold_4 No
AL5G24110 aly name=fgenesh2_kg.5__1795__AT3G54060.1;pid=485803;prot=eq;tid=485803 - scaffold_5 No
AT2G37960 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 418 Blast hits to 247 proteins in 92 species: Archae - 0; Bacteria - 163; Metazoa - 49; Fungi - 80; Plants - 28; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). transcript=eq;prot=eq; - 2 No
AT3G54060 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37960.2); Has 455 Blast hits to 322 proteins in 98 species: Archae - 0; Bacteria - 178; Metazoa - 88; Fungi - 75; Plants - 28; Viruses - 2; Other Eukaryotes - 84 (source: NCBI BLink). transcript=eq;prot=eq; - 3 No
BD1G59810 bdi nuclear hormone receptor binding (Blast2GO) pid=Bradi1g59810.1;tid=Bradi1g59810.1;GeneName=Bradi1g59810;transcript=eq;prot=eq - Bd1 No
CP00056G00700 cpa name=evm.TU.supercontig_56.70;pid=evm.TU.supercontig_56.70;prot=eq;transcript=eq - supercontig_56 No
FV6G11540 fve DNA double-strand break repair rad50 ATPase (probable) transcript=eq;prot=eq;pid=gene18765 + LG6 No
GM00G00785 gma 469 pid=16254303;transcript=eq;prot=eq;name=Glyma0469s00200.1 - scaffold_469 No
GM00G00790 gma 469 pid=16254304;transcript=eq;prot=eq;name=Glyma0469s00210.1 + scaffold_469 No
GM01G26860 gma 01 pid=16244526;transcript=eq;prot=eq;name=Glyma01g26860.1 + Gm01 No
GM01G26900 gma 01 pid=16244530;transcript=eq;prot=eq;name=Glyma01g26900.1 + Gm01 No
GM01G35720 gma 01 pid=16245283;transcript=eq;prot=eq;name=Glyma01g35720.1 + Gm01 No
GM03G15050 gma 03 pid=16251749;transcript=eq;prot=eq;name=Glyma03g15050.1 + Gm03 No
GM07G17190 gma 07 pid=16267564;transcript=eq;prot=eq;name=Glyma07g17190.1 - Gm07 No
GM18G41950 gma 18 pid=16310186;transcript=eq;prot=eq;name=Glyma18g41950.1 - Gm18 No
LJ0G083010 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_027555;name=LjSGA_027555.1 - LjSGA_027555 No
LJ0G135310 lja prot=eq;transcript=eq;scaffold=LjSGA_042285;name=LjSGA_042285.1 + LjSGA_042285 No
LJ0G230730 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_075470;name=LjSGA_075470.1 - LjSGA_075470 No
MD04G011550 mdo transcript=eq;prot=eq;pid=MDP0000951795;tid=MDP0000951795;contig=MDC003865.562 - 4 No
ME03651G00320 mes PACid=17986400;RNAname=cassava4.1_006489m;GeneName=cassava4.1_006489m.g;transcript=eq;prot=eq + scaffold03651 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier