Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM004535 has 31 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 31 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G09640 aly name=fgenesh2_kg.2__662__AT1G65220.1;pid=475532;prot=eq;tid=475532 + scaffold_2 No
AL7G33250 aly name=scaffold_703498.1;pid=915756;prot=eq;tid=947269 + scaffold_7 No
AT1G65220 ath ARM repeat superfamily protein; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: regulation of translational initiation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G36230.1); Has 791 Blast hits to 789 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 528; Fungi - 56; Plants - 172; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).;ARM repeat superfamily protein transcript=eq;prot=eq; + 1 No
AT5G36230 ath ARM repeat superfamily protein; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: regulation of translational initiation; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G65220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;ARM repeat superfamily protein transcript=eq;prot=eq; + 5 No
BD4G19650 bdi GTPase activity (Blast2GO) pid=Bradi4g19650.1;tid=Bradi4g19650.1;GeneName=Bradi4g19650;transcript=eq;prot=eq - Bd4 No
CP00039G00100 cpa name=evm.TU.supercontig_39.10;pid=evm.TU.supercontig_39.10;prot=eq;transcript=eq - supercontig_39 No
CR06G10320 cre name=estExt_fgenesh2_kg.C_120083;pid=183179;prot=eq;tid=183179;transcript=eq + chromosome_6 No
FV0G28150 fve Basic leucine zipper and W2 domain-containing protein 2 (probable) transcript=eq;prot=eq;pid=gene16812 + scf0513168 No
FV1G23350 fve Basic leucine zipper and W2 domain-containing protein 2 (probable) transcript=eq;prot=eq;pid=gene10412 + LG1 No
GM09G38530 gma 09 pid=16277648;transcript=eq;prot=eq;name=Glyma09g38530.1 - Gm09 No
GM18G47780 gma 18 pid=16310764;transcript=eq;prot=eq;name=Glyma18g47780.1 + Gm18 No
MD04G019890 mdo transcript=eq;prot=eq;pid=MDP0000608985;tid=MDP0000608985;contig=MDC001940.150 + 4 No
MD10G018940 mdo transcript=eq;prot=eq;pid=MDP0000862901;tid=MDP0000862901;contig=MDC011376.276 - 10 No
MD12G025250 mdo transcript=eq;prot=eq;pid=MDP0000718631;tid=MDP0000718631;contig=MDC005236.362 + 12 No
ME03219G00190 mes PACid=17977862;RNAname=cassava4.1_008704m;GeneName=cassava4.1_008704m.g;transcript=eq;prot=eq - scaffold03219 No
ME06711G00320 mes PACid=17961541;RNAname=cassava4.1_008685m;GeneName=cassava4.1_008685m.g;transcript=eq;prot=eq - scaffold06711 No
MT7G080110 mtr Basic leucine zipper and W2 domain-containing protein 2 (AHRD V1 ***- Q5ZL42); contains Interpro domain(s) IPR003307 eIF4-gamma/eIF5/eIF2-epsilon transcript=eq;prot=eq;pid=Medtr7g080110.1; + 7 No
OS11G21990 osa expressed protein transcript=eq;prot=eq; - 11 No
OSINDICA_09G08170 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC028070; + Chr09 No
PP00033G01920 ppa NULL name=estExt_gwp_gw1.C_330235,pid=178977,prot=eq,tid=178977 + scaffold_33 No
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