Gene family 
- Id
- HOM004532
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
- No subfamilies present
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (1 gene)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (2 genes)
- gma
- Glycine max (2 genes)
- mdo
- Malus domestica (2 genes)
- mes
- Manihot esculenta (1 gene)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (1 gene)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (2 genes)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (1 gene)
- ptr
- Populus trichocarpa (2 genes)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (4 genes)
- tca
- Theobroma cacao (1 gene)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (1 gene)
The gene family HOM004532 has 31 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM004532
Page 1 of 2, showing 20 records out of 31 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL3G35990 | aly | name=scaffold_303832.1;pid=899862;prot=eq;tid=931375 | - | scaffold_3 | No | |
| AT2G20060 | ath | Ribosomal protein L4/L1 family; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: ribosomal protein L4 (TAIR:AT1G07320.4); Has 8236 Blast hits to 8236 proteins in 2694 species: Archae - 70; Bacteria - 5573; Metazoa - 121; Fungi - 129; Plants - 100; Viruses - 0; Other Eukaryotes - 2243 (source: NCBI BLink).;Ribosomal protein L4/L1 family | transcript=eq;prot=eq; | + | 2 | No |
| BD4G15150 | bdi | pid=Bradi4g15150.1;tid=Bradi4g15150.1;GeneName=Bradi4g15150;transcript=eq;prot=eq | - | Bd4 | No | |
| CP00152G00540 | cpa | name=evm.TU.supercontig_152.54;pid=evm.TU.supercontig_152.54;prot=eq;transcript=eq | - | supercontig_152 | No | |
| CR12G07680 | cre | name=e_gwW.31.246.1;pid=120057;prot=eq;tid=120057;transcript=eq | + | chromosome_12 | No | |
| FV3G01660 | fve | 50S ribosomal protein L4 (probable) | transcript=eq;prot=eq;pid=gene19506 | - | LG3 | No |
| FV3G43090 | fve | Uncharacterized mitochondrial protein AtMg01250 (similar to) | transcript=eq;prot=eq;pid=gene20671 | - | LG3 | No |
| GM09G00980 | gma | 09 | pid=16274358;transcript=eq;prot=eq;name=Glyma09g00980.1 | - | Gm09 | No |
| GM15G11830 | gma | 15 | pid=16298473;transcript=eq;prot=eq;name=Glyma15g11830.1 | - | Gm15 | No |
| MD05G001160 | mdo | transcript=eq;prot=eq;pid=MDP0000231216;tid=MDP0000231216;contig=MDC003880.85 | + | 5 | No | |
| MD10G026920 | mdo | transcript=eq;prot=eq;pid=MDP0000847579;tid=MDP0000847579;contig=MDC016163.84 | - | 10 | No | |
| ME06598G00470 | mes | PACid=17991523;RNAname=cassava4.1_012169m;GeneName=cassava4.1_012169m.g;transcript=eq;prot=eq | - | scaffold06598 | No | |
| MRCC299_12G02570 | mrcc299 | name=gw2.12.569.1;pid=76320;prot=eq;tid=76320;transcript=eq | - | Chr_12 | No | |
| MT3G107920 | mtr | 50S ribosomal protein L4 (AHRD V1 ***- Q8LE97_ARATH); contains Interpro domain(s) IPR015498 Ribosomal protein L4 | transcript=eq;prot=eq;pid=Medtr3g107920.1; | + | 3 | No |
| OL11G01730 | olu | NULL | name=fgenesh1_pg.C_Chr_11000142,pid=17340,prot=eq,tid=17340 | + | Chr_11 | No |
| OS11G37510 | osa | ribosomal protein L4, putative, expressed | transcript=eq;prot=eq; | + | 11 | No |
| OS12G30490 | osa | ribosomal protein L4, putative, expressed | transcript=eq;prot=eq; | + | 12 | No |
| OSINDICA_11G28050 | osaindica | source=BGI China;type=FgeneSH; | transcript=eq;prot=eq;name=OsIFCC035675; | + | Chr11 | No |
| OT11G01780 | ota | 50S ribosomal protein L4 (ISS); | name=OT11G01780;protein_id=CAL55783.1;prot=eq | + | chrom11 | No |
| PP00158G00820 | ppa | NULL | name=estExt_gwp_gw1.C_1580118,pid=191233,prot=eq,tid=191233 | + | scaffold_158 | No |