Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (4 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004532 has 31 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 31 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G35990 aly name=scaffold_303832.1;pid=899862;prot=eq;tid=931375 - scaffold_3 No
AT2G20060 ath Ribosomal protein L4/L1 family; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: ribosomal protein L4 (TAIR:AT1G07320.4); Has 8236 Blast hits to 8236 proteins in 2694 species: Archae - 70; Bacteria - 5573; Metazoa - 121; Fungi - 129; Plants - 100; Viruses - 0; Other Eukaryotes - 2243 (source: NCBI BLink).;Ribosomal protein L4/L1 family transcript=eq;prot=eq; + 2 No
BD4G15150 bdi pid=Bradi4g15150.1;tid=Bradi4g15150.1;GeneName=Bradi4g15150;transcript=eq;prot=eq - Bd4 No
CP00152G00540 cpa name=evm.TU.supercontig_152.54;pid=evm.TU.supercontig_152.54;prot=eq;transcript=eq - supercontig_152 No
CR12G07680 cre name=e_gwW.31.246.1;pid=120057;prot=eq;tid=120057;transcript=eq + chromosome_12 No
FV3G01660 fve 50S ribosomal protein L4 (probable) transcript=eq;prot=eq;pid=gene19506 - LG3 No
FV3G43090 fve Uncharacterized mitochondrial protein AtMg01250 (similar to) transcript=eq;prot=eq;pid=gene20671 - LG3 No
GM09G00980 gma 09 pid=16274358;transcript=eq;prot=eq;name=Glyma09g00980.1 - Gm09 No
GM15G11830 gma 15 pid=16298473;transcript=eq;prot=eq;name=Glyma15g11830.1 - Gm15 No
MD05G001160 mdo transcript=eq;prot=eq;pid=MDP0000231216;tid=MDP0000231216;contig=MDC003880.85 + 5 No
MD10G026920 mdo transcript=eq;prot=eq;pid=MDP0000847579;tid=MDP0000847579;contig=MDC016163.84 - 10 No
ME06598G00470 mes PACid=17991523;RNAname=cassava4.1_012169m;GeneName=cassava4.1_012169m.g;transcript=eq;prot=eq - scaffold06598 No
MRCC299_12G02570 mrcc299 name=gw2.12.569.1;pid=76320;prot=eq;tid=76320;transcript=eq - Chr_12 No
MT3G107920 mtr 50S ribosomal protein L4 (AHRD V1 ***- Q8LE97_ARATH); contains Interpro domain(s) IPR015498 Ribosomal protein L4 transcript=eq;prot=eq;pid=Medtr3g107920.1; + 3 No
OL11G01730 olu NULL name=fgenesh1_pg.C_Chr_11000142,pid=17340,prot=eq,tid=17340 + Chr_11 No
OS11G37510 osa ribosomal protein L4, putative, expressed transcript=eq;prot=eq; + 11 No
OS12G30490 osa ribosomal protein L4, putative, expressed transcript=eq;prot=eq; + 12 No
OSINDICA_11G28050 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC035675; + Chr11 No
OT11G01780 ota 50S ribosomal protein L4 (ISS); name=OT11G01780;protein_id=CAL55783.1;prot=eq + chrom11 No
PP00158G00820 ppa NULL name=estExt_gwp_gw1.C_1580118,pid=191233,prot=eq,tid=191233 + scaffold_158 No
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