Gene family  

Sub-families
ORTHO004324 (27 genes in 23 species)
ORTHO042169 (2 genes in 2 species)
ORTHO070798 (2 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004446 has 32 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 32 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G39370 aly name=fgenesh1_pm.C_scaffold_1002908;pid=314128;prot=eq;tid=314128 + scaffold_1 No
AL2G18000 aly name=fgenesh1_pg.C_scaffold_2001307;pid=339208;prot=eq;tid=339208 + scaffold_2 No
AT1G44318 ath hemb2; FUNCTIONS IN: porphobilinogen synthase activity, catalytic activity, metal ion binding; INVOLVED IN: porphyrin biosynthetic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Tetrapyrrole biosynthesis, porphobilinogen synthase (InterPro:IPR001731); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT1G69740.2); Has 6838 Blast hits to 6838 proteins in 2133 species: Archae - 162; Bacteria - 3759; Metazoa - 160; Fungi - 160; Plants - 79; Viruses - 0; Other Eukaryotes - 2518 (source: NCBI BLink).;Aldolase superfamily protein transcript=eq;prot=eq; + 1 No
AT1G69740 ath Encodes a putative 5-aminolevulinate dehydratase involved in chlorophyll biosynthesis.;Aldolase superfamily protein transcript=eq;prot=eq; + 1 No
BD0G00260 bdi porphobilinogen synthase activity (Blast2GO) pid=Bradi0009s00210.5;tid=Bradi0009s00210.5;GeneName=Bradi0009s00210;transcript=eq;prot=eq - scaffold_9 No
BD3G03360 bdi porphobilinogen synthase activity (Blast2GO) pid=Bradi3g03360.1;tid=Bradi3g03360.1;GeneName=Bradi3g03360;transcript=eq;prot=eq + Bd3 No
CP00064G00930 cpa name=evm.TU.supercontig_64.93;pid=evm.TU.supercontig_64.93;prot=eq;transcript=eq - supercontig_64 No
CR02G03740 cre name=estExt_fgenesh2_pg.C_70362;pid=186639;prot=eq;tid=186639;transcript=eq + chromosome_2 No
FV2G29590 fve Delta-aminolevulinic acid dehydratase, chloroplastic (ALADH), Precursor (putative) transcript=eq;prot=eq;pid=gene11195 - LG2 No
GM04G42670 gma 04 pid=16257664;transcript=eq;prot=eq;name=Glyma04g42670.1 - Gm04 No
GM06G12110 gma 06 pid=16262633;transcript=eq;prot=eq;name=Glyma06g12110.1 + Gm06 No
LJ1G010350 lja prot=eq;transcript=eq;scaffold=CM0027;name=chr1.CM0027.90.nc - chr1 No
MD08G017270 mdo transcript=eq;prot=eq;pid=MDP0000933051;tid=MDP0000933051;contig=MDC020007.244 - 8 No
MD10G009380 mdo transcript=eq;prot=eq;pid=MDP0000189485;tid=MDP0000189485;contig=MDC010622.297 - 10 No
ME04314G00160 mes PACid=17964787;RNAname=cassava4.1_027491m;GeneName=cassava4.1_027491m.g;transcript=eq;prot=eq + scaffold04314 No
ME07238G00320 mes PACid=17991380;RNAname=cassava4.1_008036m;GeneName=cassava4.1_008036m.g;transcript=eq;prot=eq - scaffold07238 No
MRCC299_01G03970 mrcc299 name=estExt_Genewise2Plus.C_Chr_010578;pid=93011;prot=eq;tid=93011;transcript=eq + Chr_01 No
MT3G088610 mtr Delta-aminolevulinic acid dehydratase, chloroplastic (AHRD V1 ***- P43210); contains Interpro domain(s) IPR001731 Tetrapyrrole biosynthesis, porphobilinogen synthase transcript=eq;prot=eq;pid=Medtr3g088610.1; - 3 No
OL01G02370 olu NULL name=eugene.0100010239,pid=28845,prot=eq,tid=28845 + Chr_1 No
OS06G49110 osa delta%2Daminolevulinic acid dehydratase, chloroplast precursor, putative, expressed transcript=eq;prot=eq; - 6 No
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