Gene family  

Sub-families
ORTHO003888 (28 genes in 25 species)
ORTHO048213 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004431 has 32 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 32 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G18470 aly name=fgenesh1_pm.C_scaffold_4001112;pid=321055;prot=eq;tid=321055 + scaffold_4 No
AT2G33255 ath Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); Has 3270 Blast hits to 3270 proteins in 1213 species: Archae - 109; Bacteria - 2717; Metazoa - 21; Fungi - 80; Plants - 57; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink).;Haloacid dehalogenase-like hydrolase (HAD) superfamily protein transcript=eq;prot=eq; + 2 No
BD3G55260 bdi phosphoglycolate phosphatase activity (Blast2GO) pid=Bradi3g55260.1;tid=Bradi3g55260.1;GeneName=Bradi3g55260;transcript=eq;prot=eq - Bd3 No
CP00003G03480 cpa name=evm.TU.supercontig_3.348;pid=evm.TU.supercontig_3.348;prot=eq;transcript=eq - supercontig_3 No
CR01G05330 cre name=Chlre2_kg.scaffold_1000265;pid=146441;prot=eq;tid=146441;transcript=eq + chromosome_1 No
CR03G09160 cre name=SKA_Chlre2_kg.scaffold_19000020;pid=206532;prot=eq;tid=206539;transcript=eq - chromosome_3 No
FV0G37690 fve hypothetical protein transcript=eq;prot=eq;pid=gene28302 - scf0513124 No
GM10G33470 gma 10 pid=16280812;transcript=eq;prot=eq;name=Glyma10g33470.1 - Gm10 No
GM20G34120 gma 20 pid=16317796;transcript=eq;prot=eq;name=Glyma20g34120.1 + Gm20 No
LJ0G003960 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_004637;name=LjSGA_004637.1.1 - LjSGA_004637 No
LJ2G013960 lja partial;prot=eq;transcript=eq;scaffold=CM0124;name=chr2.CM0124.270.nd + chr2 No
MD17G013960 mdo transcript=eq;prot=eq;pid=MDP0000725969;tid=MDP0000725969;contig=MDC020362.334 + 17 No
ME01551G00320 mes PACid=17961898;RNAname=cassava4.1_014937m;GeneName=cassava4.1_014937m.g;transcript=eq;prot=eq + scaffold01551 No
MRCC299_02G04390 mrcc299 name=e_gw2.02.662.1;pid=79159;prot=eq;tid=79159;transcript=eq + Chr_02 No
MT1G073030 mtr Phosphoglycolate phosphatase (AHRD V1 ***- Q7NW10); contains Interpro domain(s) IPR006402 HAD-superfamily hydrolase, subfamily IA, variant 3 transcript=eq;prot=eq;pid=Medtr1g073030.1; + 1 No
MT1G073140 mtr Pyrophosphatase ppaX (AHRD V1 ***- Q8ENK3); contains Interpro domain(s) IPR006402 HAD-superfamily hydrolase, subfamily IA, variant 3 transcript=eq;prot=eq;pid=Medtr1g073140.2; + 1 No
OL07G03930 olu NULL name=ost_07_018_005,pid=87850,prot=eq,tid=87850 - Chr_7 No
OS02G57100 osa expressed protein transcript=eq;prot=eq; - 2 No
OSINDICA_02G55260 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC015846; - Chr02 No
OT07G03850 ota haloacid dehalogenase-like hydrolase-like (ISS); name=OT07G03850;protein_id=CAL54658.1;prot=eq - chrom07 No
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