Gene family  

Sub-families
ORTHO004599 (27 genes in 19 species)
ORTHO033521 (3 genes in 3 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM004401 has 32 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 32 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G01870 aly name=scaffold_700193.1;pid=912451;prot=eq;tid=943964 - scaffold_7 No
AT4G39680 ath SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034); Has 10985 Blast hits to 6880 proteins in 693 species: Archae - 26; Bacteria - 1256; Metazoa - 3900; Fungi - 1267; Plants - 2321; Viruses - 541; Other Eukaryotes - 1674 (source: NCBI BLink).;SAP domain-containing protein transcript=eq;prot=eq; - 4 No
BD1G61000 bdi nucleoside-triphosphatase activity (Blast2GO) pid=Bradi1g61000.1;tid=Bradi1g61000.1;GeneName=Bradi1g61000;transcript=eq;prot=eq + Bd1 No
CP00231G00100 cpa name=evm.TU.supercontig_231.10;pid=evm.TU.supercontig_231.10;prot=eq;transcript=eq + supercontig_231 No
CR03G11760 cre name=au.g11240_t1;pid=293428;prot=eq;tid=293435;transcript=eq - chromosome_3 No
FV6G00750 fve Apoptotic chromatin condensation inducer in the nucleus (Acinus) (probable) transcript=eq;prot=eq;pid=gene31712 + LG6 No
GM11G36120 gma 11 pid=16285556;transcript=eq;prot=eq;name=Glyma11g36120.1 - Gm11 No
GM18G02310 gma 18 pid=16307680;transcript=eq;prot=eq;name=Glyma18g02310.1 + Gm18 No
LJ0G025030 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_012912;name=LjSGA_012912.1 - LjSGA_012912 No
LJ0G039550 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_016437;name=LjSGA_016437.2 - LjSGA_016437 No
LJ0G240900 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_079569;name=LjSGA_079569.1 + LjSGA_079569 No
MD06G012910 mdo transcript=eq;prot=eq;pid=MDP0000417845;tid=MDP0000417845;contig=MDC019010.307 - 6 No
MD15G026160 mdo transcript=eq;prot=eq;pid=MDP0000199544;tid=MDP0000199544;contig=MDC015302.219 + 15 No
ME02633G00010 mes PACid=17978930;RNAname=cassava4.1_002797m;GeneName=cassava4.1_002797m.g;transcript=eq;prot=eq - scaffold02633 No
ME04019G00080 mes PACid=17974740;RNAname=cassava4.1_003098m;GeneName=cassava4.1_003098m.g;transcript=ne;prot=eq + scaffold04019 No
MT3G087830 mtr Apoptotic chromatin condensation inducer in the nucleus (AHRD V1 *-*- Q9JIX8); contains Interpro domain(s) IPR003034 DNA-binding SAP transcript=eq;prot=eq;pid=Medtr3g087830.1; + 3 No
MT8G091530 mtr Apoptotic chromatin condensation inducer in the nucleus (AHRD V1 *-*- Q9JIX8) transcript=eq;prot=eq;pid=Medtr8g091530.1; + 8 No
OS03G26630 osa SAP domain containing protein, expressed transcript=eq;prot=eq; - 3 No
OS07G43316 osa SAP domain%2Dcontaining protein, putative, expressed transcript=eq;prot=eq; + 7 No
OSINDICA_03G25460 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC006730; - Chr03 No
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