Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004351 has 32 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 32 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G00170 aly name=fgenesh2_kg.5__24__AT2G01220.2;pid=484032;prot=eq;tid=484032 + scaffold_5 No
AL5G06720 aly name=fgenesh2_kg.5__542__AT3G27610.1;pid=484550;prot=eq;tid=484550 - scaffold_5 No
AT2G01220 ath Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT3G27610.1); Has 429 Blast hits to 422 proteins in 57 species: Archae - 6; Bacteria - 30; Metazoa - 0; Fungi - 7; Plants - 76; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink).;Nucleotidylyl transferase superfamily protein transcript=eq;prot=eq; + 2 No
AT3G27610 ath Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT2G01220.2).;Nucleotidylyl transferase superfamily protein transcript=eq;prot=eq; - 3 No
BD2G47080 bdi pid=Bradi2g47080.1;tid=Bradi2g47080.1;GeneName=Bradi2g47080;transcript=eq;prot=eq - Bd2 No
CP00065G00650 cpa name=evm.TU.supercontig_65.65;pid=evm.TU.supercontig_65.65;prot=eq;transcript=eq - supercontig_65 No
CR13G06680 cre name=estExt_fgenesh1_pg.C_chromosome_130430;pid=346844;prot=eq;tid=346851;transcript=eq - chromosome_13 No
FV0G01010 fve Probable nicotinate-nucleotide adenylyltransferase (NaMN adenylyltransferase) transcript=eq;prot=eq;pid=gene03677 + scf0513158 No
GM10G41660 gma 10 pid=16281780;transcript=eq;prot=eq;name=Glyma10g41660.1 + Gm10 No
GM20G25550 gma 20 pid=16316808;transcript=eq;prot=eq;name=Glyma20g25550.1 - Gm20 No
LJ0G382820 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_139237;name=LjSGA_139237.2 + LjSGA_139237 No
LJ5G030440 lja partial;prot=eq;transcript=eq;scaffold=CM0328;name=chr5.CM0328.760.nd - chr5 No
LJ5G030480 lja partial;prot=eq;transcript=eq;scaffold=CM0328;name=chr5.CM0328.800.nd + chr5 No
MD16G001240 mdo transcript=eq;prot=eq;pid=MDP0000299824;tid=MDP0000299824;contig=MDC013096.125 + 16 No
ME03604G00470 mes PACid=17976540;RNAname=cassava4.1_009511m;GeneName=cassava4.1_009511m.g;transcript=eq;prot=eq + scaffold03604 No
MRCC299_16G00740 mrcc299 name=gw2.16.132.1;pid=69269;prot=eq;tid=69269;transcript=eq - Chr_16 No
OL14G00910 olu NULL name=estExt_Genewise_ext.C_Chr_140231,pid=51418,prot=eq,tid=51418 - Chr_14 No
OL14G01570 olu NULL name=estExt_fgenesh1_pg.C_Chr_140124,pid=25512,prot=eq,tid=25512 - Chr_14 No
OS01G49670 osa cytidylyltransferase domain containing protein, expressed transcript=eq;prot=eq; - 1 No
OSINDICA_01G47020 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC003101; - Chr01 No
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