Gene family  

Sub-families
ORTHO005478 (25 genes in 22 species)
ORTHO026751 (4 genes in 3 species)
ORTHO067916 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004284 has 33 genes in 22 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 33 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G09570 aly name=fgenesh2_kg.1__1039__AT1G09815.1;pid=471085;prot=eq;tid=471085 + scaffold_1 No
AT1G09815 ath polymerase delta 4 (POLD4); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase delta, subunit 4 (InterPro:IPR007218); Has 212 Blast hits to 212 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 86; Plants - 65; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).;polymerase delta 4 transcript=eq;prot=eq; + 1 No
BD3G41970 bdi DNA-directed DNA polymerase activity (Blast2GO) pid=Bradi3g41970.1;tid=Bradi3g41970.1;GeneName=Bradi3g41970;transcript=eq;prot=eq - Bd3 No
BD4G35390 bdi DNA-directed DNA polymerase activity (Blast2GO) pid=Bradi4g35390.1;tid=Bradi4g35390.1;GeneName=Bradi4g35390;transcript=eq;prot=eq + Bd4 No
CP00043G01380 cpa name=evm.TU.supercontig_43.138;pid=evm.TU.supercontig_43.138;prot=eq;transcript=eq + supercontig_43 No
CR06G09270 cre name=estExt_fgenesh2_kg.C_690017;pid=185774;prot=eq;tid=185774;transcript=eq + chromosome_6 No
GM05G25400 gma 05 pid=16259574;transcript=eq;prot=eq;name=Glyma05g25400.1 + Gm05 No
GM08G08420 gma 08 pid=16270411;transcript=eq;prot=eq;name=Glyma08g08420.1 + Gm08 No
LJ4G003910 lja prot=eq;transcript=eq;scaffold=CM0337;name=chr4.CM0337.20.nd - chr4 No
MD07G000010 mdo transcript=eq;prot=eq;pid=MDP0000212806;tid=MDP0000212806;contig=MDC015866.161 - 7 No
MD07G021560 mdo transcript=eq;prot=eq;pid=MDP0000327313;tid=MDP0000327313;contig=MDC012053.121 - 7 Yes
ME03614G01310 mes PACid=17965729;RNAname=cassava4.1_019170m;GeneName=cassava4.1_019170m.g;transcript=eq;prot=eq + scaffold03614 No
MRCC299_02G05730 mrcc299 name=fgenesh2_pg.C_Chr_02000237;pid=98861;prot=eq;tid=98861;transcript=eq - Chr_02 No
MT0G30650 mtr DNA polymerase delta subunit 4 (AHRD V1 *-*- Q3T0X9); contains Interpro domain(s) IPR007218 DNA polymerase delta, subunit 4 transcript=eq;prot=eq;pid=AC235005_17.1; + AC235005.4 No
MT0G31510 mtr DNA polymerase delta subunit 4 (AHRD V1 *-*- Q3T0X9); contains Interpro domain(s) IPR007218 DNA polymerase delta, subunit 4 transcript=eq;prot=eq;pid=AC235009_14.1; - AC235009.1 No
MT0G32690 mtr DNA polymerase delta subunit 4 (AHRD V1 *-** Q9HCU8); contains Interpro domain(s) IPR007218 DNA polymerase delta, subunit 4 transcript=eq;prot=eq;pid=AC235662_11.1; - AC235662.8 No
MT0G32720 mtr DNA polymerase delta subunit 4 family protein (AHRD V1 *-*- C5P6F7_COCP7); contains Interpro domain(s) IPR007218 DNA polymerase delta, subunit 4 transcript=eq;prot=eq;pid=AC235662_14.1; - AC235662.8 No
OL07G02650 olu NULL name=eugene.0700010262,pid=32665,prot=eq,tid=32665 + Chr_7 No
OS08G43080 osa POLD4B %2D Putative DNA polymerase delta complex subunit transcript=eq;prot=eq; - 8 No
OS09G34850 osa POLD4A %2D Putative DNA polymerase delta complex subunit, expressed transcript=eq;prot=eq; - 9 No
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