Gene family  

Sub-families
ORTHO005462 (25 genes in 19 species)
ORTHO041530 (2 genes in 2 species)
ORTHO044111 (2 genes in 2 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (6 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004281 has 33 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 33 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G05260 aly name=fgenesh2_kg.1__534__AT1G05730.1;pid=470580;prot=eq;tid=470580 + scaffold_1 No
AL1G05270 aly name=Al_scaffold_0001_512;pid=878745;prot=eq;tid=910258 + scaffold_1 No
AL4G16640 aly name=fgenesh2_kg.4__1155__AT2G31725.1;pid=482095;prot=eq;tid=482095 - scaffold_4 No
AL4G31300 aly name=fgenesh2_kg.4__2546__AT2G43720.1;pid=483486;prot=eq;tid=483486 + scaffold_4 No
AT1G05730 ath Eukaryotic protein of unknown function (DUF842); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF842) (TAIR:AT2G31725.1); Has 245 Blast hits to 245 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 169; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).;Eukaryotic protein of unknown function (DUF842) transcript=eq;prot=eq; + 1 No
AT1G05740 ath Eukaryotic protein of unknown function (DUF842); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF842) (TAIR:AT1G05730.1); Has 144 Blast hits to 144 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).;Eukaryotic protein of unknown function (DUF842) transcript=eq;prot=eq; + 1 No
AT2G31725 ath Eukaryotic protein of unknown function (DUF842); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF842) (TAIR:AT1G05730.1); Has 259 Blast hits to 259 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).;Eukaryotic protein of unknown function (DUF842) transcript=eq;prot=eq; - 2 No
AT2G43720 ath Eukaryotic protein of unknown function (DUF842); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF842) (TAIR:AT2G31725.1); Has 263 Blast hits to 263 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 179; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).;Eukaryotic protein of unknown function (DUF842) transcript=eq;prot=eq; + 2 No
BD4G20800 bdi pid=Bradi4g20800.1;tid=Bradi4g20800.1;GeneName=Bradi4g20800;transcript=eq;prot=eq + Bd4 No
CP00009G03650 cpa name=evm.TU.supercontig_9.365;pid=evm.TU.supercontig_9.365;prot=eq;transcript=eq + supercontig_9 No
FV0G32430 fve Protein FAM136A (probable) transcript=eq;prot=eq;pid=gene14007 + scf0513178 No
GM02G06480 gma 02 pid=16247186;transcript=eq;prot=eq;name=Glyma02g06480.1 - Gm02 No
GM04G13180 gma 04 pid=16255807;transcript=eq;prot=eq;name=Glyma04g13180.1 - Gm04 No
GM06G44180 gma 06 pid=16265124;transcript=eq;prot=eq;name=Glyma06g44180.1 - Gm06 No
GM06G44210 gma 06 pid=16265127;transcript=eq;prot=eq;name=Glyma06g44210.1 - Gm06 No
GM06G47800 gma 06 pid=16265521;transcript=eq;prot=eq;name=Glyma06g47800.1 + Gm06 No
GM06G47810 gma 06 pid=16265522;transcript=eq;prot=eq;name=Glyma06g47810.1 + Gm06 No
MD05G011340 mdo transcript=eq;prot=eq;pid=MDP0000379106;tid=MDP0000379106;contig=MDC003521.145 + 5 No
ME07947G00020 mes PACid=17972798;RNAname=cassava4.1_018415m;GeneName=cassava4.1_018415m.g;transcript=eq;prot=eq - scaffold07947 No
MT3G009130 mtr Protein FAM136A (AHRD V1 ***- Q6PBU0); contains Interpro domain(s) IPR008560 Protein of unknown function DUF842, eukaryotic transcript=eq;prot=eq;pid=Medtr3g009130.1; + 3 No
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