Gene family  

Sub-families
ORTHO005168 (26 genes in 23 species)
ORTHO047962 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (1 gene)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004255 has 33 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 33 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G24960 aly name=fgenesh2_kg.5__1891__AT3G54860.1;pid=485899;prot=eq;tid=485899 - scaffold_5 No
AT3G54860 ath Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.;Sec1/munc18-like (SM) proteins superfamily transcript=eq;prot=eq; - 3 No
BD1G65360 bdi pid=Bradi1g65360.1;tid=Bradi1g65360.1;GeneName=Bradi1g65360;transcript=eq;prot=eq - Bd1 No
BD1G75720 bdi syntaxin-3 binding, syntaxin-2 binding (Blast2GO) pid=Bradi1g75720.1;tid=Bradi1g75720.1;GeneName=Bradi1g75720;transcript=eq;prot=eq + Bd1 No
CP00912G00010 cpa name=evm.TU.supercontig_912.1;pid=evm.TU.supercontig_912.1;prot=eq;transcript=eq + supercontig_912 No
CP01603G00020 cpa name=evm.TU.supercontig_1603.2;pid=evm.TU.supercontig_1603.2;prot=eq;transcript=eq + supercontig_1603 No
CR12G06690 cre name=SAN_Chlre2_kg.scaffold_89000006;pid=195470;prot=eq;tid=195470;transcript=eq - chromosome_12 No
FV5G20800 fve Vacuolar protein sorting-associated protein 33 homolog (AtVPS33) (similar to) transcript=eq;prot=eq;pid=gene12087 + LG5 No
FV5G20810 fve Vacuolar protein sorting-associated protein 33 homolog (AtVPS33) (similar to) transcript=eq;prot=eq;pid=gene12088 + LG5 No
FV7G23200 fve Vacuolar protein sorting-associated protein 33 homolog (AtVPS33) (putative) transcript=eq;prot=eq;pid=gene23470 + LG7 No
GM10G35210 gma 10 pid=16281016;transcript=eq;prot=eq;name=Glyma10g35210.1 - Gm10 No
MD00G206760 mdo transcript=eq;prot=eq;pid=MDP0000185557;tid=MDP0000185557;contig=MDC008909.173 + MDC008909.173 No
MD00G333530 mdo transcript=eq;prot=eq;pid=MDP0000445410;tid=MDP0000445410;contig=MDC014114.266 - MDC014114.266 No
MD00G333570 mdo transcript=eq;prot=eq;pid=MDP0000142142;tid=MDP0000142142;contig=MDC014114.270 - MDC014114.270 No
MD00G446100 mdo transcript=eq;prot=eq;pid=MDP0000216327;tid=MDP0000216327;contig=MDC020467.64 + MDC020467.64 No
MD00G446120 mdo transcript=eq;prot=eq;pid=MDP0000314905;tid=MDP0000314905;contig=MDC020467.70 + MDC020467.70 No
MD01G008340 mdo transcript=eq;prot=eq;pid=MDP0000912183;tid=MDP0000912183;contig=MDC012597.1570 + 1 No
ME03741G00170 mes PACid=17987122;RNAname=cassava4.1_004065m;GeneName=cassava4.1_004065m.g;transcript=ne;prot=eq - scaffold03741 No
MRCC299_04G01350 mrcc299 name=fgenesh2_pg.C_Chr_04000098;pid=99903;prot=eq;tid=99903;transcript=eq - Chr_04 No
OL12G03150 olu NULL name=eugene.1200010310,pid=26965,prot=eq,tid=26965 - Chr_12 No
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