Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004221 has 33 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 33 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G45000 aly name=scaffold_104778.1;pid=891984;prot=eq;tid=923497 + scaffold_1 No
AT1G50510 ath indigoidine synthase A family protein; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome, plasma membrane; CONTAINS InterPro DOMAIN/s: Indigoidine synthase A like protein (InterPro:IPR007342); Has 1680 Blast hits to 1674 proteins in 598 species: Archae - 0; Bacteria - 980; Metazoa - 68; Fungi - 108; Plants - 51; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).;indigoidine synthase A family protein transcript=eq;prot=eq; + 1 No
BD1G00860 bdi pid=Bradi1g00860.3;tid=Bradi1g00860.3;GeneName=Bradi1g00860;transcript=eq;prot=eq - Bd1 No
CP00084G00130 cpa name=evm.TU.supercontig_84.13;pid=evm.TU.supercontig_84.13;prot=eq;transcript=eq - supercontig_84 No
CR02G15220 cre name=kg.chromosome_2_#_2371_#_chlre3.24.91.1.1;pid=302932;prot=eq;tid=302939;transcript=eq - chromosome_2 No
FV2G48250 fve UPF0724 protein C1861.05 (probable) transcript=eq;prot=eq;pid=gene14845 + LG2 No
GM09G00500 gma 09 pid=16274307;transcript=eq;prot=eq;name=Glyma09g00500.1 - Gm09 No
LJ3G004700 lja prot=eq;transcript=eq;scaffold=CM0634;name=chr3.CM0634.440.nc + chr3 No
MD00G503530 mdo transcript=eq;prot=eq;pid=MDP0000254511;tid=MDP0000254511;contig=MDC027525.17 - MDC027525.17 No
MD00G509810 mdo transcript=eq;prot=eq;pid=MDP0000229355;tid=MDP0000229355;contig=MDC032597.6 + MDC032597.6 No
ME06582G00810 mes PACid=17971987;RNAname=cassava4.1_011202m;GeneName=cassava4.1_011202m.g;transcript=eq;prot=eq - scaffold06582 No
MRCC299_07G00520 mrcc299 name=EuGene.0700010052;pid=59767;prot=eq;tid=59767;transcript=eq + Chr_07 No
MT4G031220 mtr Pseudouridine-5'-phosphate glycosidase (AHRD V1 ***- C0ZIY1); contains Interpro domain(s) IPR007342 Indigoidine synthase A like protein transcript=eq;prot=eq;pid=Medtr4g031220.1; + 4 No
OL10G03250 olu NULL name=eugene.1000010328,pid=26294,prot=eq,tid=26294 - Chr_10 No
OS08G39420 osa uncharacterized protein yeiN, putative, expressed transcript=eq;prot=eq; - 8 No
OSINDICA_08G37780 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC027223; - Chr08 No
OSINDICA_08G37820 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC027225; - Chr08 No
OT10G03350 ota Predicted carbohydrate kinase, contains PfkB domain (ISS); name=OT10G03350;protein_id=CAL56293.1;prot=eq - chrom10 No
PP00345G00230 ppa NULL name=estExt_fgenesh1_pm.C_3450006,pid=108917,prot=eq,tid=108917 - scaffold_345 No
PT01G25330 ptr PACid=17324444;name=POPTR_0001s26090;alias=pt039134m; transcript=eq;prot=eq;protein_id=17324444; + scaffold_1 No
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