Gene family  

Sub-families
ORTHO007378 (23 genes in 21 species)
ORTHO075851 (2 genes in 1 species)
ORTHO075852 (2 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (7 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family HOM004213 has 33 genes in 21 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 33 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G36780 aly name=scaffold_603811.1;pid=911754;prot=eq;tid=943267 + scaffold_6 No
AT4G04930 ath Encodes a sphingolipid delta4-desaturase, involved in sphingolipid biosynthesis. Specifically expressed in floral tissues. Knockout mutants were devoid of sphinga-4,8-dienine in floral tissues.;fatty acid desaturase family protein transcript=eq;prot=eq; + 4 No
BD5G16510 bdi stearoyl-CoA 9-desaturase activity (Blast2GO) pid=Bradi5g16510.1;tid=Bradi5g16510.1;GeneName=Bradi5g16510;transcript=eq;prot=eq + Bd5 No
CP00027G00580 cpa name=evm.TU.supercontig_27.59;pid=evm.TU.supercontig_27.59;prot=eq;transcript=eq - supercontig_27 No
FV3G05950 fve Sphingolipid delta(4)-desaturase DES1 (putative) transcript=eq;prot=eq;pid=gene30403 - LG3 No
GM13G31440 gma 13 pid=16292247;transcript=eq;prot=eq;name=Glyma13g31440.1 - Gm13 No
GM15G07900 gma 15 pid=16298017;transcript=eq;prot=eq;name=Glyma15g07900.1 + Gm15 No
LJ6G017600 lja prot=eq;transcript=eq;scaffold=LjT04E21;name=chr6.LjT04E21.180.nc - chr6 No
MD00G193630 mdo transcript=eq;prot=eq;pid=MDP0000180570;tid=MDP0000180570;contig=MDC008319.392 + MDC008319.392 No
MD00G193650 mdo transcript=eq;prot=eq;pid=MDP0000415189;tid=MDP0000415189;contig=MDC008319.392 + MDC008319.392 No
MD10G023800 mdo transcript=eq;prot=eq;pid=MDP0000688638;tid=MDP0000688638;contig=MDC010150.221 - 10 No
ME08500G00070 mes PACid=17984980;RNAname=cassava4.1_011333m;GeneName=cassava4.1_011333m.g;transcript=eq;prot=eq - scaffold08500 No
ME09000G00070 mes PACid=17990853;RNAname=cassava4.1_012089m;GeneName=cassava4.1_012089m.g;transcript=eq;prot=eq - scaffold09000 No
MRCC299_10G04440 mrcc299 name=estExt_Genewise2Plus.C_Chr_100570;pid=95334;prot=eq;tid=95334;transcript=eq + Chr_10 No
MT2G013070 mtr Sphingolipid delta(4)-desaturase DES1 (AHRD V1 **** Q3ZBY7); contains Interpro domain(s) IPR011388 Sphingolipid delta4-desaturase transcript=eq;prot=eq;pid=Medtr2g013070.1; - 2 No
OS02G42660 osa sphingolipid delta desaturase, putative, expressed transcript=eq;prot=eq; + 2 No
OSINDICA_02G40900 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC014817; + Chr02 No
PP00049G00950 ppa NULL name=fgenesh1_pm.scaffold_49000017,pid=56936,prot=eq,tid=56936 + scaffold_49 No
PT11G04850 ptr PACid=17312195;name=POPTR_0011s05040;alias=pt014290m,eugene3.01240027,Pt-DES.1; transcript=eq;prot=eq;protein_id=17312195; + scaffold_11 No
RC29851G00360 rco name=29851.m002395;gene=29851.t000037;note=29851.t000037;transcript=eq;prot=eq + 29851 No
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