Gene family  

Sub-families
ORTHO009909 (19 genes in 15 species)
ORTHO018910 (6 genes in 5 species)
ORTHO047451 (2 genes in 2 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (4 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM004209 has 33 genes in 19 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 33 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G45100 aly name=fgenesh2_kg.1__4147__AT1G50620.1;pid=474193;prot=eq;tid=474193 + scaffold_1 No
AT1G50620 ath RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G20280.1); Has 3714 Blast hits to 3101 proteins in 414 species: Archae - 4; Bacteria - 443; Metazoa - 1736; Fungi - 538; Plants - 319; Viruses - 13; Other Eukaryotes - 661 (source: NCBI BLink).;RING/FYVE/PHD zinc finger superfamily protein transcript=eq;prot=eq; + 1 No
AT3G20280 ath RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G50620.1); Has 11431 Blast hits to 6184 proteins in 707 species: Archae - 24; Bacteria - 2884; Metazoa - 3648; Fungi - 2195; Plants - 284; Viruses - 200; Other Eukaryotes - 2196 (source: NCBI BLink).;RING/FYVE/PHD zinc finger superfamily protein transcript=eq;prot=eq; + 3 No
BD3G53567 bdi pid=Bradi3g53567.1;tid=Bradi3g53567.1;GeneName=Bradi3g53567;transcript=eq;prot=eq + Bd3 No
CP00012G02380 cpa name=evm.TU.supercontig_12.238;pid=evm.TU.supercontig_12.238;prot=eq;transcript=eq - supercontig_12 No
CP00012G02390 cpa name=evm.TU.supercontig_12.239;pid=evm.TU.supercontig_12.239;prot=eq;transcript=eq - supercontig_12 No
CP00012G02420 cpa name=evm.TU.supercontig_12.242;pid=evm.TU.supercontig_12.242;prot=eq;transcript=eq - supercontig_12 No
CP00159G00030 cpa name=evm.TU.supercontig_159.3;pid=evm.TU.supercontig_159.3;prot=eq;transcript=eq + supercontig_159 Yes
FV3G26340 fve PHD finger protein At3g20280 (probable) transcript=eq;prot=eq;pid=gene03487 - LG3 No
GM02G46490 gma 02 pid=16250406;transcript=eq;prot=eq;name=Glyma02g46490.1 - Gm02 No
GM14G02150 gma 14 pid=16294054;transcript=eq;prot=eq;name=Glyma14g02150.1 + Gm14 No
MD03G016630 mdo transcript=eq;prot=eq;pid=MDP0000516935;tid=MDP0000516935;contig=MDC000877.176 + 3 No
MD07G006280 mdo transcript=eq;prot=eq;pid=MDP0000691257;tid=MDP0000691257;contig=MDC001185.117 + 7 Yes
MD11G017310 mdo transcript=eq;prot=eq;pid=MDP0000249802;tid=MDP0000249802;contig=MDC012013.303 + 11 No
ME03332G00180 mes PACid=17967497;RNAname=cassava4.1_001574m;GeneName=cassava4.1_001574m.g;transcript=eq;prot=eq - scaffold03332 No
MT5G093940 mtr PHD finger protein At3g20280 (AHRD V1 *-*- Q5PNS0); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type transcript=eq;prot=eq;pid=Medtr5g093940.1; - 5 No
OS02G48800 osa PHD finger family protein, putative, expressed transcript=eq;prot=eq; + 2 No
OS02G48810 osa PHD%2Dfinger family protein, expressed transcript=eq;prot=eq; + 2 No
OS06G20410 osa BAH domain containing protein, expressed transcript=eq;prot=eq; - 6 No
OSINDICA_02G47050 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC040165; + Chr02 No
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