Gene family  

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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004180 has 33 genes in 23 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 33 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G12010 aly name=fgenesh2_kg.8__763__AT5G48840.1;pid=494947;prot=eq;tid=494947 - scaffold_8 No
AT5G48840 ath Encodes a pantothenate synthetase that appears to be located in the cytosol. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis. Analysis of the catalytic properties of this enzyme indicate that it might be able to synthesize adequate amounts of pantothenate even in the presence of low levels of pantoate.;homolog of bacterial PANC transcript=eq;prot=eq; - 5 No
BD1G01460 bdi pantoate-beta-alanine ligase activity (Blast2GO) pid=Bradi1g01460.1;tid=Bradi1g01460.1;GeneName=Bradi1g01460;transcript=eq;prot=eq - Bd1 No
CP00008G01630 cpa name=evm.TU.supercontig_8.164;pid=evm.TU.supercontig_8.164;prot=eq;transcript=eq - supercontig_8 No
CR02G03610 cre name=e_gwH.7.153.1;pid=97116;prot=eq;tid=97116;transcript=eq + chromosome_2 No
FV2G15300 fve Pantoate--beta-alanine ligase, Precursor (similar to) transcript=eq;prot=eq;pid=gene17530 - LG2 No
GM08G47050 gma 08 pid=16274112;transcript=eq;prot=eq;name=Glyma08g47050.1 - Gm08 No
GM18G38020 gma 18 pid=16309857;transcript=eq;prot=eq;name=Glyma18g38020.1 - Gm18 No
GM18G38030 gma 18 pid=16309858;transcript=eq;prot=eq;name=Glyma18g38030.1 - Gm18 No
MD10G012410 mdo transcript=eq;prot=eq;pid=MDP0000240948;tid=MDP0000240948;contig=MDC011573.196 - 10 No
MD17G010110 mdo transcript=eq;prot=eq;pid=MDP0000401219;tid=MDP0000401219;contig=MDC013244.171 + 17 No
ME06825G00120 mes PACid=17971721;RNAname=cassava4.1_012000m;GeneName=cassava4.1_012000m.g;transcript=eq;prot=eq - scaffold06825 No
MRCC299_14G02500 mrcc299 name=gw2.14.267.1;pid=70764;prot=eq;tid=70764;transcript=eq - Chr_14 No
MT7G058910 mtr Pantothenate synthetase (AHRD V1 *-*- C4XPZ7); contains Interpro domain(s) IPR003721 Pantoate-beta-alanine ligase transcript=eq;prot=eq;pid=Medtr7g058910.1; - 7 No
MT7G058920 mtr Pantoate-beta-alanine ligase (AHRD V1 **** Q8LEA6_ARATH); contains Interpro domain(s) IPR003721 Pantoate-beta-alanine ligase transcript=eq;prot=eq;pid=Medtr7g058920.1; - 7 No
OL09G02490 olu NULL name=e_gwEuk.9.321.1,pid=35160,prot=eq,tid=35160 - Chr_9 No
OS03G63490 osa pantoate%2D%2Dbeta%2Dalanine ligase, putative, expressed transcript=eq;prot=eq; + 3 No
OSINDICA_00G13130 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFSC047245; - Scaffold017928 No
OSINDICA_00G19600 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFSC047424; - Scaffold020134 Yes
OSINDICA_03G60560 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009004; + Chr03 No
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