Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004165 has 33 genes in 22 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 33 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G01450 aly name=fgenesh1_pg.C_scaffold_4000116;pid=343774;prot=eq;tid=343774 + scaffold_4 No
AL4G19120 aly name=fgenesh2_kg.4__1392__AT2G33800.1;pid=482332;prot=eq;tid=482332 - scaffold_4 No
AT2G33800 ath Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to cadmium ion, response to cold, translation; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5, bacterial-type (InterPro:IPR005712), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G64880.1); Has 8967 Blast hits to 8967 proteins in 2880 species: Archae - 262; Bacteria - 5121; Metazoa - 552; Fungi - 265; Plants - 165; Viruses - 0; Other Eukaryotes - 2602 (source: NCBI BLink).;Ribosomal protein S5 family protein transcript=eq;prot=eq; - 2 No
BD2G06080 bdi fibroblast growth factor 3 binding, fibroblast growth factor 1 binding (Blast2GO) pid=Bradi2g06080.1;tid=Bradi2g06080.1;GeneName=Bradi2g06080;transcript=eq;prot=eq - Bd2 No
CP00464G00040 cpa name=evm.TU.supercontig_464.4;pid=evm.TU.supercontig_464.4;prot=eq;transcript=eq + supercontig_464 No
CR16G02470 cre name=estExt_gwp_1H.C_370127;pid=131752;prot=eq;tid=131752;transcript=eq + chromosome_16 No
FV0G35860 fve 30S ribosomal protein S5, chloroplastic, Precursor (probable) transcript=eq;prot=eq;pid=gene11322 + scf0513146 No
FV0G42120 fve Ubiquitin-conjugating enzyme E2-34 kDa (probable) transcript=eq;prot=eq;pid=gene01917 - scf0512956 Yes
FV2G33640 fve 30S ribosomal protein S5, chloroplastic, Precursor (probable) transcript=eq;prot=eq;pid=gene09120 - LG2 No
FV3G15550 fve 30S ribosomal protein S5, chloroplastic, Precursor (similar to) transcript=eq;prot=eq;pid=gene02372 + LG3 No
GM07G31830 gma 07 pid=16268425;transcript=eq;prot=eq;name=Glyma07g31830.1 - Gm07 No
GM13G24640 gma 13 pid=16291439;transcript=eq;prot=eq;name=Glyma13g24640.1 + Gm13 No
MD05G004580 mdo transcript=eq;prot=eq;pid=MDP0000266765;tid=MDP0000266765;contig=MDC000200.359 - 5 No
MD10G023470 mdo transcript=eq;prot=eq;pid=MDP0000327971;tid=MDP0000327971;contig=MDC016124.53 + 10 No
ME07007G00040 mes PACid=17970630;RNAname=cassava4.1_012516m;GeneName=cassava4.1_012516m.g;transcript=eq;prot=eq + scaffold07007 No
MRCC299_16G00720 mrcc299 name=estExt_Genewise2.C_Chr_160107;pid=92603;prot=eq;tid=92603;transcript=eq - Chr_16 No
OL14G00900 olu NULL name=fgenesh1_pm.C_Chr_14000019,pid=13247,prot=eq,tid=13247 - Chr_14 No
OL14G01560 olu NULL name=fgenesh1_pg.C_Chr_14000123,pid=18077,prot=eq,tid=18077 - Chr_14 No
OS03G34040 osa ribosomal protein, putative, expressed transcript=eq;prot=eq; - 3 No
OSINDICA_03G32560 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC007125; - Chr03 No
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