Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (2 genes)



The gene family HOM004130 has 33 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 33 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G35960 aly name=fgenesh2_kg.6__3199__AT4G12620.1;pid=490065;prot=eq;tid=490065 - scaffold_6 No
AL7G29440 aly name=fgenesh2_kg.7__2868__AT4G14700.1;pid=493435;prot=eq;tid=493435 - scaffold_7 No
AT4G12620 ath Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime.;origin of replication complex 1B transcript=eq;prot=eq; - 4 No
AT4G14700 ath Encodes origin of replication complex 1a subunit.The protein contains a PHD domain,binds methylated DNA and appears to function as a transcriptional activator.;origin recognition complex 1 transcript=eq;prot=eq; + 4 No
BD1G47050 bdi ATPase activity (Blast2GO) pid=Bradi1g47050.1;tid=Bradi1g47050.1;GeneName=Bradi1g47050;transcript=eq;prot=eq - Bd1 No
CP00084G00640 cpa name=evm.TU.supercontig_84.64;pid=evm.TU.supercontig_84.64;prot=eq;transcript=eq + supercontig_84 No
CR10G08210 cre name=Chlre2_kg.scaffold_4000183;pid=143060;prot=eq;tid=143060;transcript=eq + chromosome_10 No
FV1G29340 fve Origin recognition complex subunit 1 (probable) transcript=eq;prot=eq;pid=gene30536 - LG1 No
GM13G41490 gma 13 pid=16293410;transcript=eq;prot=eq;name=Glyma13g41490.1 + Gm13 No
GM15G03900 gma 15 pid=16297550;transcript=eq;prot=eq;name=Glyma15g03900.1 - Gm15 No
LJ0G204850 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_065747;name=LjSGA_065747.1 - LjSGA_065747 No
MD00G156090 mdo transcript=eq;prot=eq;pid=MDP0000233454;tid=MDP0000233454;contig=MDC006713.200 - MDC006713.200 No
MD15G008700 mdo transcript=eq;prot=eq;pid=MDP0000136041;tid=MDP0000136041;contig=MDC003268.267 + 15 No
ME04681G00360 mes PACid=17966846;RNAname=cassava4.1_001588m;GeneName=cassava4.1_001588m.g;transcript=eq;prot=eq - scaffold04681 No
MRCC299_15G03560 mrcc299 name=e_gw2.15.45.1;pid=88660;prot=eq;tid=88660;transcript=eq + Chr_15 No
MT3G060290 mtr Origin recognition complex subunit 1 (AHRD V1 *-*- Q945C8_MAIZE) transcript=eq;prot=eq;pid=Medtr3g060290.1; - 3 No
OL04G05060 olu NULL name=fgenesh1_pg.C_Chr_4000382,pid=15230,prot=eq,tid=15230 - Chr_4 No
OS06G08790 osa ORC1 %2D Putative origin recognition complex subunit 1, expressed transcript=eq;prot=eq; + 6 No
OSINDICA_06G08140 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009712; + Chr06 No
OT04G05420 ota origin recognition complex subunit 1-like protein (ISS); name=OT04G05420;protein_id=CAL51940.1;prot=eq - chrom04 No
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