Gene family  

Sub-families
ORTHO004585 (27 genes in 24 species)
ORTHO047728 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM004111 has 33 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 33 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G36790 aly name=fgenesh2_kg.6__3261__AT4G04940.1;pid=490127;prot=eq;tid=490127 - scaffold_6 No
AT4G04940 ath transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Small-subunit processome, Utp21 (InterPro:IPR007319), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; - 4 No
BD1G30580 bdi microtubule-severing ATPase activity (Blast2GO) pid=Bradi1g30580.1;tid=Bradi1g30580.1;GeneName=Bradi1g30580;transcript=eq;prot=eq + Bd1 No
CP00074G00390 cpa name=evm.TU.supercontig_74.39;pid=evm.TU.supercontig_74.39;prot=eq;transcript=eq + supercontig_74 No
CP00074G00420 cpa name=evm.TU.supercontig_74.42;pid=evm.TU.supercontig_74.42;prot=eq;transcript=eq + supercontig_74 No
CP29901G00010 cpa name=evm.TU.contig_29901.1;pid=evm.TU.contig_29901.1;prot=eq;transcript=eq + contig_29901 No
CR10G10450 cre name=pasa_Sanger_mRNA5602;pid=420641;prot=eq;tid=395839;transcript=eq - chromosome_10 No
FV2G03420 fve WD repeat-containing protein 36 (TA-WDRP) (probable) transcript=eq;prot=eq;pid=gene24379 + LG2 No
FV5G22050 fve hypothetical protein transcript=eq;prot=eq;pid=gene12205 - LG5 No
GM01G00460 gma 01 pid=16242912;transcript=eq;prot=eq;name=Glyma01g00460.1 - Gm01 No
GM08G47440 gma 08 pid=16274157;transcript=eq;prot=eq;name=Glyma08g47440.1 + Gm08 No
LJ2G009310 lja prot=eq;transcript=eq;scaffold=CM0373;name=chr2.CM0373.620.nc + chr2 No
MD13G026860 mdo transcript=eq;prot=eq;pid=MDP0000217662;tid=MDP0000217662;contig=MDC019441.268 + 13 No
MD16G016860 mdo transcript=eq;prot=eq;pid=MDP0000180439;tid=MDP0000180439;contig=MDC007876.259 - 16 No
ME10695G00010 mes PACid=17992384;RNAname=cassava4.1_010447m;GeneName=cassava4.1_010447m.g;transcript=eq;prot=eq - scaffold10695 No
ME10695G00020 mes PACid=17992381;RNAname=cassava4.1_030922m;GeneName=cassava4.1_030922m.g;transcript=eq;prot=eq - scaffold10695 No
MRCC299_10G05190 mrcc299 name=fgenesh2_pm.C_Chr_10000088;pid=98006;prot=eq;tid=98006;transcript=eq + Chr_10 No
OL16G00300 olu NULL name=e_gwEuk.16.29.1,pid=37792,prot=eq,tid=37792 + Chr_16 No
OS06G43690 osa WD repeat%2Dcontaining protein, putative, expressed transcript=eq;prot=eq; + 6 No
OSINDICA_06G39470 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC011639; + Chr06 No
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