Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM004094 has 34 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G29290 aly name=Al_scaffold_0002_2746;pid=878152;prot=eq;tid=909665 - scaffold_2 No
AT1G80500 ath SNARE-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, ER to Golgi vesicle-mediated transport; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sedlin (InterPro:IPR006722), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT2G20930.1); Has 584 Blast hits to 580 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 289; Fungi - 112; Plants - 97; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).;SNARE-like superfamily protein transcript=eq;prot=eq; + 1 No
BD3G48660 bdi pid=Bradi3g48660.1;tid=Bradi3g48660.1;GeneName=Bradi3g48660;transcript=eq;prot=eq + Bd3 No
BD5G14900 bdi pid=Bradi5g14900.1;tid=Bradi5g14900.1;GeneName=Bradi5g14900;transcript=eq;prot=eq + Bd5 No
CP40005G00010 cpa name=evm.TU.contig_40005.1;pid=evm.TU.contig_40005.1;prot=eq;transcript=eq - contig_40005 No
CR13G02000 cre name=estExt_fgenesh2_kg.C_20054;pid=182697;prot=eq;tid=182697;transcript=eq - chromosome_13 No
FV7G18440 fve Trafficking protein particle complex subunit 2 (MIP-2A) (probable) transcript=eq;prot=eq;pid=gene09265 + LG7 No
GM04G38460 gma 04 pid=16257165;transcript=eq;prot=eq;name=Glyma04g38460.1 + Gm04 No
GM06G16590 gma 06 pid=16263183;transcript=eq;prot=eq;name=Glyma06g16590.1 - Gm06 No
LJ1G015730 lja prot=eq;transcript=eq;scaffold=CM0955;name=chr1.CM0955.130.nd + chr1 No
MD08G022480 mdo transcript=eq;prot=eq;pid=MDP0000308315;tid=MDP0000308315;contig=MDC018232.94 + 8 No
MD15G035840 mdo transcript=eq;prot=eq;pid=MDP0000836711;tid=MDP0000836711;contig=MDC009913.277 + 15 No
ME02915G00100 mes PACid=17990432;RNAname=cassava4.1_017551m;GeneName=cassava4.1_017551m.g;transcript=eq;prot=eq - scaffold02915 No
ME03025G00050 mes PACid=17965470;RNAname=cassava4.1_018892m;GeneName=cassava4.1_018892m.g;transcript=eq;prot=eq + scaffold03025 No
MRCC299_11G00750 mrcc299 name=e_gw2.11.540.1;pid=86311;prot=eq;tid=86311;transcript=eq - Chr_11 No
MT3G097020 mtr Trafficking protein particle complex subunit 2 (AHRD V1 ***- Q3T0F2); contains Interpro domain(s) IPR006722 Sedlin transcript=eq;prot=eq;pid=Medtr3g097020.1; - 3 No
OL04G04180 olu NULL name=gwEuk.4.629.1,pid=9413,prot=eq,tid=9413 + Chr_4 No
OS02G40000 osa trafficking protein particle complex subunit, putative, expressed transcript=eq;prot=eq; + 2 No
OS04G42500 osa trafficking protein particle complex subunit, putative, expressed transcript=eq;prot=eq; + 4 No
OSINDICA_02G38700 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC014668; + Chr02 No
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