Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (3 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM004020 has 34 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G18530 aly name=fgenesh2_kg.6__1862__AT5G18480.1;pid=488728;prot=eq;tid=488728 - scaffold_6 No
AT5G18480 ath plant glycogenin-like starch initiation protein 6 (PGSIP6); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process, biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 5 (TAIR:AT1G08990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;plant glycogenin-like starch initiation protein 6 transcript=eq;prot=eq; - 5 No
BD3G49197 bdi pid=Bradi3g49197.1;tid=Bradi3g49197.1;GeneName=Bradi3g49197;transcript=eq;prot=eq + Bd3 No
BD5G15780 bdi Putative glycosyltransferase, CAZy family GT8 pid=Bradi5g15780.1;tid=Bradi5g15780.1;GeneName=Bradi5g15780;Name=BdGT8E3;transcript=eq;prot=eq + Bd5 No
CP00051G00070 cpa name=evm.TU.supercontig_51.7;pid=evm.TU.supercontig_51.7;prot=eq;transcript=eq - supercontig_51 No
CR10G01110 cre name=pasa_Sanger_mRNA3425;pid=422076;prot=eq;tid=393635;transcript=eq + chromosome_10 No
FV0G26900 fve Glycogenin-1 (probable) transcript=eq;prot=eq;pid=gene16694 + scf0513168 No
GM03G40980 gma 03 pid=16254083;transcript=eq;prot=eq;name=Glyma03g40980.1 - Gm03 No
GM10G30700 gma 10 pid=16280493;transcript=eq;prot=eq;name=Glyma10g30700.1 - Gm10 No
GM19G43630 gma 19 pid=16314818;transcript=eq;prot=eq;name=Glyma19g43630.1 - Gm19 No
GM20G37000 gma 20 pid=16318131;transcript=eq;prot=eq;name=Glyma20g37000.1 - Gm20 No
LJ0G426020 lja partial;prot=eq;transcript=eq;scaffold=LjT37O09;name=LjT37O09.50.nd + chr0 No
LJ0G426300 lja partial;prot=eq;transcript=eq;scaffold=LjT37O09;name=LjT37O09.330.nd - chr0 No
LJ1G055890 lja partial;prot=eq;transcript=eq;scaffold=CM0600;name=chr1.CM0600.210.nd + chr1 No
MD00G246560 mdo transcript=eq;prot=eq;pid=MDP0000770666;tid=MDP0000770666;contig=MDC010621.94 + MDC010621.94 No
MD04G019010 mdo transcript=eq;prot=eq;pid=MDP0000121520;tid=MDP0000121520;contig=MDC004431.176 + 4 No
ME02903G00010 mes PACid=17982048;RNAname=cassava4.1_005360m;GeneName=cassava4.1_005360m.g;transcript=eq;prot=eq + scaffold02903 No
MT1G080460 mtr Glycogenin-1 (AHRD V1 *-*- Q9R062); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 transcript=eq;prot=eq;pid=Medtr1g080460.1; + 1 No
MT1G080660 mtr Replication protein 14 (AHRD V1 *-*- B3I8F5_ECOLX) transcript=eq;pid=Medtr1g080660.1; - 1 No
MT1G080670 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 transcript=eq;prot=eq;pid=Medtr1g080670.1; + 1 No
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