Gene family 
- Id
- HOM004020
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
- No subfamilies present
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (1 gene)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (4 genes)
- lja
- Lotus japonicus (3 genes)
- mdo
- Malus domestica (2 genes)
- mes
- Manihot esculenta (1 gene)
- mtr
- Medicago truncatula (3 genes)
- osa
- Oryza sativa ssp. japonica (2 genes)
- osaindica
- Oryza sativa ssp. indica (2 genes)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (1 gene)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (1 gene)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (1 gene)
The gene family HOM004020 has 34 genes in 22 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM004020
Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL6G18530 | aly | name=fgenesh2_kg.6__1862__AT5G18480.1;pid=488728;prot=eq;tid=488728 | - | scaffold_6 | No | |
| AT5G18480 | ath | plant glycogenin-like starch initiation protein 6 (PGSIP6); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process, biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 5 (TAIR:AT1G08990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;plant glycogenin-like starch initiation protein 6 | transcript=eq;prot=eq; | - | 5 | No |
| BD3G49197 | bdi | pid=Bradi3g49197.1;tid=Bradi3g49197.1;GeneName=Bradi3g49197;transcript=eq;prot=eq | + | Bd3 | No | |
| BD5G15780 | bdi | Putative glycosyltransferase, CAZy family GT8 | pid=Bradi5g15780.1;tid=Bradi5g15780.1;GeneName=Bradi5g15780;Name=BdGT8E3;transcript=eq;prot=eq | + | Bd5 | No |
| CP00051G00070 | cpa | name=evm.TU.supercontig_51.7;pid=evm.TU.supercontig_51.7;prot=eq;transcript=eq | - | supercontig_51 | No | |
| CR10G01110 | cre | name=pasa_Sanger_mRNA3425;pid=422076;prot=eq;tid=393635;transcript=eq | + | chromosome_10 | No | |
| FV0G26900 | fve | Glycogenin-1 (probable) | transcript=eq;prot=eq;pid=gene16694 | + | scf0513168 | No |
| GM03G40980 | gma | 03 | pid=16254083;transcript=eq;prot=eq;name=Glyma03g40980.1 | - | Gm03 | No |
| GM10G30700 | gma | 10 | pid=16280493;transcript=eq;prot=eq;name=Glyma10g30700.1 | - | Gm10 | No |
| GM19G43630 | gma | 19 | pid=16314818;transcript=eq;prot=eq;name=Glyma19g43630.1 | - | Gm19 | No |
| GM20G37000 | gma | 20 | pid=16318131;transcript=eq;prot=eq;name=Glyma20g37000.1 | - | Gm20 | No |
| LJ0G426020 | lja | partial;prot=eq;transcript=eq;scaffold=LjT37O09;name=LjT37O09.50.nd | + | chr0 | No | |
| LJ0G426300 | lja | partial;prot=eq;transcript=eq;scaffold=LjT37O09;name=LjT37O09.330.nd | - | chr0 | No | |
| LJ1G055890 | lja | partial;prot=eq;transcript=eq;scaffold=CM0600;name=chr1.CM0600.210.nd | + | chr1 | No | |
| MD00G246560 | mdo | transcript=eq;prot=eq;pid=MDP0000770666;tid=MDP0000770666;contig=MDC010621.94 | + | MDC010621.94 | No | |
| MD04G019010 | mdo | transcript=eq;prot=eq;pid=MDP0000121520;tid=MDP0000121520;contig=MDC004431.176 | + | 4 | No | |
| ME02903G00010 | mes | PACid=17982048;RNAname=cassava4.1_005360m;GeneName=cassava4.1_005360m.g;transcript=eq;prot=eq | + | scaffold02903 | No | |
| MT1G080460 | mtr | Glycogenin-1 (AHRD V1 *-*- Q9R062); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 | transcript=eq;prot=eq;pid=Medtr1g080460.1; | + | 1 | No |
| MT1G080660 | mtr | Replication protein 14 (AHRD V1 *-*- B3I8F5_ECOLX) | transcript=eq;pid=Medtr1g080660.1; | - | 1 | No |
| MT1G080670 | mtr | Unknown Protein (AHRD V1); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 | transcript=eq;prot=eq;pid=Medtr1g080670.1; | + | 1 | No |