Gene family  

Sub-families
ORTHO005009 (26 genes in 24 species)
ORTHO028459 (4 genes in 1 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (4 genes)



The gene family HOM004018 has 34 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G20390 aly name=fgenesh2_kg.3__2091__AT3G18790.1;pid=479390;prot=eq;tid=479390 + scaffold_3 No
AT3G18790 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has 1147 Blast hits to 965 proteins in 236 species: Archae - 12; Bacteria - 13; Metazoa - 351; Fungi - 230; Plants - 49; Viruses - 9; Other Eukaryotes - 483 (source: NCBI BLink). transcript=eq;prot=eq; + 3 No
BD3G48020 bdi pid=Bradi3g48020.1;tid=Bradi3g48020.1;GeneName=Bradi3g48020;transcript=eq;prot=eq - Bd3 No
CP00042G00870 cpa name=evm.TU.supercontig_42.87;pid=evm.TU.supercontig_42.87;prot=eq;transcript=eq - supercontig_42 No
CR10G02050 cre name=estExt_fgenesh1_pm.C_chromosome_100120;pid=379485;prot=eq;tid=379492;transcript=eq - chromosome_10 No
FV4G18130 fve Pre-mRNA-splicing factor ISY1 homolog (probable) transcript=eq;prot=eq;pid=gene16889 + LG4 No
GM09G18830 gma 09 pid=16275878;transcript=eq;prot=eq;name=Glyma09g18830.1 - Gm09 No
GM17G33660 gma 17 pid=16306943;transcript=eq;prot=eq;name=Glyma17g33660.1 - Gm17 No
LJ3G003710 lja prot=eq;transcript=eq;scaffold=CM0282;name=chr3.CM0282.580.nc - chr3 No
MD00G006130 mdo transcript=eq;prot=eq;pid=MDP0000269843;tid=MDP0000269843;contig=MDC000224.260 + MDC000224.260 No
MD00G299500 mdo transcript=eq;prot=eq;pid=MDP0000260617;tid=MDP0000260617;contig=MDC012747.486 + MDC012747.486 No
MD00G388360 mdo transcript=eq;prot=eq;pid=MDP0000208201;tid=MDP0000208201;contig=MDC017577.85 - MDC017577.85 No
MD03G025370 mdo transcript=eq;prot=eq;pid=MDP0000317575;tid=MDP0000317575;contig=MDC029378.10 - 3 No
MD04G016490 mdo transcript=eq;prot=eq;pid=MDP0000247548;tid=MDP0000247548;contig=MDC002270.88 + 4 No
MD12G021960 mdo transcript=eq;prot=eq;pid=MDP0000447987;tid=MDP0000447987;contig=MDC000803.286 + 12 No
ME03852G00050 mes PACid=17991740;RNAname=cassava4.1_012681m;GeneName=cassava4.1_012681m.g;transcript=ne;prot=eq + scaffold03852 No
MRCC299_11G02090 mrcc299 name=estExt_Genewise2Plus.C_Chr_110207;pid=95428;prot=eq;tid=95428;transcript=eq + Chr_11 No
MT5G095510 mtr Pre-mRNA-splicing factor ISY1 homolog (AHRD V1 ***- Q6AYB3); contains Interpro domain(s) IPR009360 Isy1-like splicing transcript=eq;prot=eq;pid=Medtr5g095510.1; + 5 No
OL04G03130 olu NULL name=fgenesh1_pm.C_Chr_4000065,pid=12466,prot=eq,tid=12466 + Chr_4 No
OS02G39050 osa pre%2DmRNA%2Dsplicing factor ISY1, putative, expressed transcript=eq;prot=eq; - 2 No
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